PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA12G00190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | MYB_related | ||||||||
Protein Properties | Length: 212aa MW: 24106.8 Da PI: 6.4034 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.5 | 3e-13 | 97 | 141 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++ E++l++ + k++G+g+W++I+r + +Rt+ q+ s+ qky AA12G00190 97 PWSENEHKLFLIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKY 141 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.632 | 1 | 51 | IPR017877 | Myb-like domain |
SMART | SM00717 | 3.8E-4 | 2 | 53 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.75E-11 | 4 | 58 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.28E-4 | 6 | 47 | No hit | No description |
PROSITE profile | PS51294 | 18.402 | 90 | 146 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.15E-15 | 92 | 146 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.2E-16 | 93 | 145 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 3.8E-10 | 94 | 140 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-9 | 94 | 144 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.47E-8 | 97 | 142 | No hit | No description |
Pfam | PF00249 | 3.7E-11 | 97 | 141 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MAANQWSREE DKMFERTLVI FPEGSPYRWE KIALQLNKSI DEVKEHYDAL VHDIFEIDSG 60 RVDVPDYIDD SAAGWDSAGQ ISFGSKNGDN ERKKGTPWSE NEHKLFLIGL KRYGKGDWRS 120 ISRNVVVTRT PTQVASHAQK YFLRQNSGKK ERKRSSIHDI TTVDTNLAVV PASNMDWSGQ 180 QESPVHHQLQ PQLSVSEFGQ QLPPGLDYGF GM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA12G00190 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013653806.1 | 1e-121 | transcription factor DIVARICATA-like | ||||
Swissprot | Q9FNN6 | 1e-53 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A397ZYQ0 | 1e-120 | A0A397ZYQ0_BRACM; Uncharacterized protein | ||||
STRING | scaffold_600421.1 | 1e-119 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5127 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 1e-109 | MYB family protein |
Publications ? help Back to Top | |||
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