PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA129G00001

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

HB-other

Protein Properties

Length: 159aa MW: 18904.6 Da PI: 8.8081

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA129G00001	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.4	8.9e-22	29	84	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rrk ++++++q+eeLe++F ++++p++ +r eLAkk+gL+ +q+k+WFqN+R+k k AA129G00001 29 RRKYQRHNPHQIEELENFFGQCPNPDKMQRSELAKKTGLENKQIKFWFQNKRTKIK 84 8999**************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.38E-20	16	85	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.7E-20	21	84	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.795	26	86	IPR001356	Homeobox domain
SMART	SM00389	3.4E-19	28	90	IPR001356	Homeobox domain
CDD	cd00086	1.30E-16	29	84	No hit	No description
Pfam	PF00046	2.5E-19	29	84	IPR001356	Homeobox domain
PRINTS	PR00031	9.6E-6	57	66	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	61	84	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.6E-6	66	82	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MSEKRAYENE SRLESDNVVA DISVERRIRR KYQRHNPHQI EELENFFGQC PNPDKMQRSE 60 LAKKTGLENK QIKFWFQNKR TKIKTLTVLI LFNQIIYDQI ENEVLKQENE NLMAINKSLI 120 GETKTALCRI CHRRVNLNVV TLGYYQDFKT EESTLNDLP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA129G00001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17003	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	7e-28	HD-ZIP family protein