PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA127G00016
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 122aa    MW: 13747.7 Da    PI: 10.6998
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA127G00016genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.6e-19453255
          AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+e+Aa a++ a++ l+g
  AA127G00016  4 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEQAALAYDGAARFLRG 53
                 7********.**********883....5***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-13453IPR001471AP2/ERF domain
SMARTSM003802.1E-33467IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-31461IPR001471AP2/ERF domain
PROSITE profilePS5103222.352461IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-22462IPR016177DNA-binding domain
CDDcd000181.13E-28461No hitNo description
PRINTSPR003675.5E-11516IPR001471AP2/ERF domain
PRINTSPR003675.5E-112743IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MEVHYRGVRK RPWGRYAAEI RDPWKKTRVW LGTFDTPEQA ALAYDGAARF LRGIKAKTNF  60
PSPLSLDLNL NHLPPTPDHL HHHHHHRLFL RTGILNAKST TVASVSTEPP VYLTASPSPA  120
VA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21461563ATERF1
3gcc_A3e-21461563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA127G00016
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890772.12e-55ethylene-responsive transcription factor 12
SwissprotQ94ID65e-56ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLD7KCV95e-54D7KCV9_ARALL; ATERF12/ERF12
STRINGfgenesh2_kg.1__3004__AT1G28360.19e-55(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.12e-43ERF domain protein 12