PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA124G00010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | B3 | ||||||||
Protein Properties | Length: 124aa MW: 14353.2 Da PI: 8.1929 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.7 | 7.5e-17 | 17 | 98 | 10 | 97 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++s l +p +f e+ + + t +l+ ++W+v+l +k+++ +++t+GW+ F+++n+L +g+f++F +dg+++f v+++ AA124G00010 17 KTSSESLAIPLSFNEHLRDP--LPLTAKLQGCGPKVWKVNL--KKTQQYIYFTNGWRLFAQENNLTDGEFLTFVYDGSRTF--EVSIY 98 4566779******9555544..8899***************..****99**************************997777..67665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.79E-21 | 6 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.239 | 8 | 101 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-20 | 8 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.60E-16 | 9 | 99 | No hit | No description |
SMART | SM01019 | 3.5E-17 | 10 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.4E-15 | 16 | 99 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MANNGTLPRF FIGFLSKTSS ESLAIPLSFN EHLRDPLPLT AKLQGCGPKV WKVNLKKTQQ 60 YIYFTNGWRL FAQENNLTDG EFLTFVYDGS RTFEVSIYNR YGCKETRGLV NQQDIMDLDD 120 QWRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 3e-23 | 1 | 103 | 3 | 104 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA124G00010 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013647917.1 | 1e-44 | B3 domain-containing protein REM20-like | ||||
Refseq | XP_013647918.1 | 1e-44 | B3 domain-containing protein REM20-like | ||||
Swissprot | Q8LAV5 | 9e-37 | REM20_ARATH; B3 domain-containing protein REM20 | ||||
TrEMBL | A0A0D3CTK8 | 3e-42 | A0A0D3CTK8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6H7B4 | 3e-42 | A0A3P6H7B4_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g067300.1 | 4e-43 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1561 | 23 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 4e-39 | B3 family protein |
Publications ? help Back to Top | |||
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