PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA11G00142
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Nin-like
Protein Properties Length: 215aa    MW: 25691.7 Da    PI: 9.233
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA11G00142genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK759.3e-24104154252
      RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                 ++++++ +++k+F+ pi +AAk+L+v+lTvLK++CR++ I RWPhRk+ksl
  AA11G00142 104 QEKLEMCEIKKFFDRPIMKAAKDLNVGLTVLKKRCRELEIYRWPHRKLKSL 154
                 678999*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.41588176IPR003035RWP-RK domain
PfamPF020422.4E-19107154IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MALNSSEIKK EFDADSLYEM FDKLPPLLDT EDLRPNKGIK FKFEFSNFDD LFENMEFMGA  60
KISSDIKMVT EEEPYILSDS SSSLNTEEKN RVIKRKRKWK TKRQEKLEMC EIKKFFDRPI  120
MKAAKDLNVG LTVLKKRCRE LEIYRWPHRK LKSLNSLIKN LKNVGMEEEV ENLEKHRVLI  180
EEEPDAELTD GTKRLRQACF KANYKKRKSI EYHYY
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA11G00142
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282071.23e-98protein RKD4
SwissprotQ9LVU86e-88RKD4_ARATH; Protein RKD4
TrEMBLR0GE405e-97R0GE40_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006282071.18e-98(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125852230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.12e-78RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER
    Gene regulatory network models for floral organ determination.
    Methods Mol. Biol., 2014. 1110: p. 441-69
    [PMID:24395275]