PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA11G00080
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GRF
Protein Properties Length: 320aa    MW: 35790.1 Da    PI: 8.5368
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA11G00080genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.92e-2496139245
         WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  epgrCrRtDGKkWRCsr+v++++k+CErHlhrgr rsrk +e+
  AA11G00080  96 LEPGRCRRTDGKKWRCSREVVSNHKYCERHLHRGRPRSRKLVEQ 139
                 69**************************************9986 PP
2QLQ50.65.9e-185182233
         QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33
                +FT++Ql +L++Q+++yKy++a+ PvP +Ll+
  AA11G00080 51 PFTNEQLKELERQAMIYKYMIASIPVPFDLLV 82
                9*****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.6E-105086IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.3685186IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.1E-115181IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.02195139IPR014977WRC domain
PfamPF088793.3E-2097138IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDFLKISDKT TTTPCRTDSF FGLHQQKDMD FHHLIAPHAG NGVLGCYYYY PFTNEQLKEL  60
ERQAMIYKYM IASIPVPFDL LVSSSPSPIK NVNGDLEPGR CRRTDGKKWR CSREVVSNHK  120
YCERHLHRGR PRSRKLVEQP YSRNNGGSDK ITPKKVSSLL ESSVEFENRG SKIFPVPAPT  180
KTEEDNKYLN FIDVWSDQLR GSEKQSSSSS PVSSVNGNLS LYSLDLSMGG NNYDEMSRIQ  240
MGENPVYSSY GTLGGPLAEI LRPNPYLDFS SLQSTADPLF TNGGGDRESC SLATTLTRSS  300
SPSRAMKKKN GSVSDENSHV
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA11G00080
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864265.11e-121growth-regulating factor 7
SwissprotQ9FJB81e-121GRF7_ARATH; Growth-regulating factor 7
TrEMBLD7MT201e-120D7MT20_ARALL; AtGRF7
STRINGscaffold_801857.11e-121(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121062731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.11e-114growth-regulating factor 7
Publications ? help Back to Top
  1. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]