PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA119G00002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | B3 | ||||||||
Protein Properties | Length: 198aa MW: 22200.4 Da PI: 6.0097 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 99 | 2.9e-31 | 30 | 123 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k ltpsdv+k++rlv+pk++ae+h ++++ +++ l++ed sg+ W+++++y+++s++yvltkGW++Fvk+++L+ gD+v F+++ AA119G00002 30 FEKSLTPSDVGKLNRLVIPKQHAEKHfplnnnsssSSSNDKGMLLSFEDDSGKCWRFRYSYWNSSQSYVLTKGWSRFVKDKELDPGDVVFFHRT 123 99***************************9999885555699*************************************************943 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.5E-38 | 24 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.16E-31 | 26 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.99E-29 | 28 | 122 | No hit | No description |
SMART | SM01019 | 1.9E-21 | 30 | 138 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-28 | 30 | 124 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.408 | 30 | 137 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MYHSSNTSPP LFSHHHSSTD ITTTTTTPLF EKSLTPSDVG KLNRLVIPKQ HAEKHFPLNN 60 NSSSSSSNDK GMLLSFEDDS GKCWRFRYSY WNSSQSYVLT KGWSRFVKDK ELDPGDVVFF 120 HRTAATAVTE THSIPSPVTV GSSRTVRLFG VNLECQLDDD GDDDTSAVST DVEPPCPDGY 180 YGQNMYYYHL QTTPTMLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-45 | 29 | 125 | 7 | 98 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-45 | 29 | 125 | 7 | 98 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA119G00002 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009130927.1 | 1e-73 | PREDICTED: B3 domain-containing protein At5g06250-like isoform X2 | ||||
Refseq | XP_009130928.1 | 1e-73 | PREDICTED: B3 domain-containing protein At5g06250-like isoform X2 | ||||
Refseq | XP_009130929.1 | 1e-73 | PREDICTED: B3 domain-containing protein At5g06250-like isoform X2 | ||||
Refseq | XP_013723834.1 | 1e-73 | B3 domain-containing protein At5g06250 | ||||
Refseq | XP_013723840.1 | 1e-73 | B3 domain-containing protein At5g06250 | ||||
Swissprot | Q8RYD3 | 6e-53 | Y3158_ARATH; B3 domain-containing protein At3g11580 | ||||
TrEMBL | A0A3P6AJN6 | 2e-72 | A0A3P6AJN6_BRAOL; Uncharacterized protein | ||||
STRING | Bra005886.1-P | 5e-73 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1220 | 28 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06250.1 | 4e-62 | B3 family protein |
Publications ? help Back to Top | |||
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