PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA118G00064 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | ERF | ||||||||
Protein Properties | Length: 271aa MW: 30149.6 Da PI: 6.4041 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 9.6e-19 | 130 | 179 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 gy+GVr+++ +g+++AeIrdp+ r +r++lg+f tae+Aa+a+++a+ ++g AA118G00064 130 GYRGVRQRP-WGKFAAEIRDPK----RaTRVWLGTFETAEDAARAYDRAAIGFRG 179 8********.**********83....57*********************987776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.012 | 130 | 187 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-21 | 130 | 188 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.5E-38 | 130 | 193 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.8E-12 | 130 | 178 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-32 | 131 | 187 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.11E-21 | 131 | 187 | No hit | No description |
PRINTS | PR00367 | 1.5E-11 | 131 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-11 | 153 | 169 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MHYPNNRLGA PIQDQELTQT RIHYPFSYPE HMQQEQELSV IVSALEHVIS GDNERAQFHG 60 ESTVISAGMP RSDSDTCQVC RIEGCLGCNY FYTPNQRIEI EEEQSIVKRE SVGKKTEGGK 120 IRKRKNKKNG YRGVRQRPWG KFAAEIRDPK RATRVWLGTF ETAEDAARAY DRAAIGFRGP 180 RAKLNFPFLD YTSVAPVHDT GAGSSVSVSV SATNSLKTEQ WHGEEEVRGG GGGGGGGGRE 240 CDMEEWMRMM MIMDFGNGDS SDSGNTIADI F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-25 | 131 | 188 | 3 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 227 | 238 | RGGGGGGGGGGR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00469 | DAP | Transfer from AT4G34410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA118G00064 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006412231.1 | 1e-109 | ethylene-responsive transcription factor ERF109 | ||||
Swissprot | Q9SZ06 | 2e-88 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | V4MBC1 | 1e-107 | V4MBC1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006412231.1 | 1e-108 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 1e-74 | redox responsive transcription factor 1 |
Publications ? help Back to Top | |||
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