PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA112G00015

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bHLH

Protein Properties

Length: 526aa MW: 57368.5 Da PI: 5.7307

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA112G00015	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	6.8e-09	322	370	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq AA112G00015 322 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 370 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.26E-11	317	374	No hit	No description
SuperFamily	SSF47459	2.36E-15	317	376	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.478	319	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-15	320	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.5E-6	322	370	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.4E-10	325	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
MDVSEKEDFT AQKRNGDTTL NYDSVDNNTD WRVSAPIDSY PPHSLISSCP SSSSASQMMD 60 SFGQTLWYDP TNVQPVSYGG FNANASSFRA NIDRSLEMNW NGPNLLPKSN GIFLPNPSSF 120 LPPSIAQFPA DSGFIERAAR FSLFSSGNFS DMVNQPLGNP DSIGLFLQSG AQGMQIRSGT 180 ELVQCPSNEL TPNDASTTGK DCFKKEMGIG SQPKPNVPGS GNVSEDTQSS GGNERRVKGG 240 ETSSKGFNTR KRKRQGQDSE AGQSHRSQQS GEEPDSNGDE KKTDEQSPNS PANKTNSGKK 300 QTSDPPKDGY IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD 360 EIINYVQSLQ RQVEVSNFYA LICFFLNLSI EDYKLYLFCL QFLSMKLATV NPQMDFNLEG 420 LLTKDATLQL RPGPSSGPQF PQNVSVVYPS LPHGFMQQTL SSIGDPSVSP PLSQPMNGGF 480 KRQETHGGGW EGDLQNVIHM NYGSGDVTPD PQAATAAANT NMKVEP

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

MDVSEKEDFT AQKRNGDTTL NYDSVDNNTD WRVSAPIDSY PPHSLISSCP SSSSASQMMD  60
SFGQTLWYDP TNVQPVSYGG FNANASSFRA NIDRSLEMNW NGPNLLPKSN GIFLPNPSSF  120
LPPSIAQFPA DSGFIERAAR FSLFSSGNFS DMVNQPLGNP DSIGLFLQSG AQGMQIRSGT  180
ELVQCPSNEL TPNDASTTGK DCFKKEMGIG SQPKPNVPGS GNVSEDTQSS GGNERRVKGG  240
ETSSKGFNTR KRKRQGQDSE AGQSHRSQQS GEEPDSNGDE KKTDEQSPNS PANKTNSGKK  300
QTSDPPKDGY IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD  360
EIINYVQSLQ RQVEVSNFYA LICFFLNLSI EDYKLYLFCL QFLSMKLATV NPQMDFNLEG  420
LLTKDATLQL RPGPSSGPQF PQNVSVVYPS LPHGFMQQTL SSIGDPSVSP PLSQPMNGGF  480
KRQETHGGGW EGDLQNVIHM NYGSGDVTPD PQAATAAANT NMKVEP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA112G00015

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006391072.1	0.0	transcription factor bHLH49
Swissprot	Q9CAA9	0.0	BH049_ARATH; Transcription factor bHLH49
TrEMBL	V4KM38	0.0	V4KM38_EUTSA; Uncharacterized protein
STRING	XP_006391072.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5900	25	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]