PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA10G00357

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

LBD

Protein Properties

Length: 266aa MW: 28729.6 Da PI: 8.5778

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA10G00357	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	91.4	1e-28	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a p++ r+ +++sl+ eA+ r+ +P+yG+vg++++++++l+q+++e+ AA10G00357 4 SCNGCRVLRKGCSEDCSIRPCLawiksPEAQANATVFLAKFYGRAGLMNLINAGPDNLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWHLCQSAVEA 102 6*************************************************************************************************9 PP DUF260 95 allkee 100 +l +e+ AA10G00357 103 VLKGEP 108 988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	8.2E-99	1	266	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	16.105	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.1E-23	4	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDN 60 LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWHLCQSAV EAVLKGEPIA AIASDAAANG 120 QGPPLKSYDI RHNSKDENSA AAVTGSTDRK RGRTRRTKKA SVVGNPSESQ GKSGGEVSHE 180 SSLSHQSGVV AVHEEESKES ESNFSEVLTF SPPAPAMQEP GEIKLDLTLR LEPVSRAYHV 240 VPVKKRKIGV FGSCEEERTF KTELVL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA10G00357

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006408407.1	1e-156	LOB domain-containing protein 41
Swissprot	Q9M886	1e-156	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	V4LH47	1e-155	V4LH47_EUTSA; Uncharacterized protein
STRING	XP_006408407.1	1e-155	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7721	27	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-133	LOB domain-containing protein 41