PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA10G00319

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

MYB

Protein Properties

Length: 298aa MW: 33832.7 Da PI: 6.4171

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA10G00319	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.9	2.3e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l + ++++G g+W++ ++ g++R++k+c++rw +yl AA10G00319 14 KGPWTPEEDEKLMKHIRKHGHGSWRALPKQAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	59.4	7.8e-19	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eE+e +++++ +lG++ W++Ia +++ gRt++++k++w+++ AA10G00319 67 RGNFTPEEEETIINLHSLLGNK-WSSIAGHLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-27	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.063	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	5.62E-33	11	108	IPR009057	Homeodomain-like
SMART	SM00717	3.6E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-17	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.08E-11	16	61	No hit	No description
PROSITE profile	PS51294	27.978	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	8.3E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	5.7E-17	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	4.55E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MGRSPCCDES GLKKGPWTPE EDEKLMKHIR KHGHGSWRAL PKQAGLNRCG KSCRLRWTNY 60 LRPDIKRGNF TPEEEETIIN LHSLLGNKWS SIAGHLPGRT DNEIKNYWNT HIRKKLLQMG 120 IDPVTHRPRT DHLNVLNALP QLLAAANFNN LLNLNQTTQF DAASIAKAQL LHSMIQVLSN 180 NNNSAVFGQS SLLENNQNNQ NLFDYQAQNI QLSSQIGIVD DQNSNIPRLI SESCDEAKEI 240 VMSKNDNVNN VSNPSSTSTF TQDNNNQPWC DIIDDEASDS YWKDIIEQTC SEPWPFRE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-29	12	116	5	108	B-MYB
1h8a_C	8e-29	12	116	25	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA10G00319

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF249310	1e-32	AF249310.2 Arabidopsis thaliana putative transcription factor (MYB107) mRNA, complete cds.
GenBank	AK228268	1e-32	AK228268.1 Arabidopsis thaliana mRNA for MYB family transcription factor like protein, complete cds, clone: RAFL14-72-D06.
GenBank	AY519583	1e-32	AY519583.1 Arabidopsis thaliana MYB transcription factor (At3g02940) mRNA, complete cds.
GenBank	BT025660	1e-32	BT025660.1 Arabidopsis thaliana At3g02940 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006408360.1	1e-153	transcription factor MYB93
Refseq	XP_013591324.1	1e-153	PREDICTED: transcription factor MYB3-like
Refseq	XP_013729182.1	1e-153	transcription factor MYB41-like
Swissprot	Q9S9Z2	2e-90	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A0D3AFX8	1e-152	A0A0D3AFX8_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6GB01	1e-152	A0A3P6GB01_BRAOL; Uncharacterized protein
TrEMBL	V4MBG9	1e-152	V4MBG9_EUTSA; Uncharacterized protein
STRING	Bo1g155040.1	1e-153	(Brassica oleracea)
STRING	XP_006408360.1	1e-153	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02940.1	1e-131	myb domain protein 107

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]