PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA10G00230
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family LBD
Protein Properties Length: 267aa    MW: 28444.9 Da    PI: 7.5996
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA10G00230genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.51.3e-39511521101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+aela+++
  AA10G00230  51 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPMNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELAVVQ 149
                 7***********************9989**********************************************************************9 PP

      DUF260  99 eel 101
                 ++l
  AA10G00230 150 SQL 152
                 985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.02750152IPR004883Lateral organ boundaries, LOB
PfamPF031956.1E-3951149IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MADQQRGHET SESRRKSSAG KRTTASHHST PPSSLSFSGG SMAAGTGTAS PCGACKFLRR  60
KCVSGCIFAP HFGSDQGAAR FAAVHKVFGA SNVSKLLLHI PMNRRHDAVV TISYEAQARL  120
SDPVYGCVST ILALQQQVAS LQAELAVVQS QLISSRVAMA NVMHQQQQQQ LVVMQQPEYS  180
NNSSASTTLA AGVAMNSFSA TAACSYDVMP PANLEHSLQP MPPPHHQVRR GGDCEEEEES  240
GVDFSVVAGS TVAGAEVMFP TEDFHRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-37471537112LOB family transfactor Ramosa2.1
5ly0_B1e-37471537112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA10G00230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882305.11e-132LOB domain-containing protein 20
SwissprotQ9SRV31e-131LBD20_ARATH; LOB domain-containing protein 20
TrEMBLD7L1941e-131D7L194_ARALL; LOB domain protein 20
STRINGfgenesh1_pg.C_scaffold_30003011e-132(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-104LOB domain-containing protein 20