PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA10G00198 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | G2-like | ||||||||
Protein Properties | Length: 431aa MW: 48869 Da PI: 7.5213 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.9 | 5.4e-34 | 46 | 100 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPkti+++m+++gLtl+h+kSHLQkYRl AA10G00198 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIQGLTLYHLKSHLQKYRL 100 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.612 | 43 | 103 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-31 | 44 | 101 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.78E-17 | 45 | 101 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.9E-24 | 46 | 101 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.2E-10 | 48 | 99 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.8E-25 | 174 | 220 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MYYHNQHQGK NILSSSRMPI PSERHPFLRG GNSPGDSGLI LSTDAKPRLK WTPDLHERFI 60 EAVNQLGGAD KATPKTIMKV MGIQGLTLYH LKSHLQKYRL SKNLNGQANS GLNKMSKFYF 120 HETQEHSSFE FLQRSKHSMI HIGMITMMEE KNPDAEEIQS ESLSIGPQPN KNSPISEALQ 180 MQIEVQRRLH EQLEVQRHLQ LRIEAQGKYL QAVLEKAQET LGRQNLGAAG LEAAKVQLSE 240 LVSKVSAEYP NSTFLEPKEL QNLCPQPMQI SYPPDCSLDS CLTSSEGTQK NPKMIENNRL 300 GLRTYLGDST SEQKEIMEQP LFQRMELSWA EGLRGNPYLS TMVSDTDPRI SYSERSPGRL 360 SIGVGLNGHR SQHGNTEYTD ERFKDKSEDH KVQSRSRKAM DSTTELDLNT HVENFGSSRP 420 KQFDLNGFSW N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-20 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-20 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 9e-21 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 9e-21 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 9e-21 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 9e-21 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-20 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-20 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-20 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-20 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-20 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-20 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00331 | DAP | Transfer from AT3G04030 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA10G00198 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ222089 | 0.0 | HQ222089.1 Arabidopsis thaliana myb family transcription factor (MYR2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001118567.1 | 0.0 | Homeodomain-like superfamily protein | ||||
Swissprot | Q9SQQ9 | 0.0 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | D7L209 | 0.0 | D7L209_ARALL; Predicted protein | ||||
STRING | Bostr.2570s0305.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3336 | 27 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 0.0 | G2-like family protein |
Publications ? help Back to Top | |||
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