PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA10G00063

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

MYB_related

Protein Properties

Length: 1034aa MW: 115113 Da PI: 9.7041

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA10G00063	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.6	1.2e-07	44	77	3	37
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 W+ E e+++da +++G + Wk++a+t+ + R+ AA10G00063 44 QWSRGELERFYDAYRKHGQD-WKKVAATIRNSRSV 77 6***************99.*****9977775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.97E-7	43	90	IPR009057	Homeodomain-like
Pfam	PF06584	1.2E-30	622	722	IPR033471	DIRP domain
SMART	SM01135	4.0E-56	622	723	IPR033471	DIRP domain
SMART	SM00333	0.0025	709	766	IPR002999	Tudor domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005654	Cellular Component	nucleoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1034 aa Download sequence Send to blast
MAPVRKSRSV NKRFNNEFSP GKDAGNSRKN KQRKKKLSDK LGPQWSRGEL ERFYDAYRKH 60 GQDWKKVAAT IRNSRSVDMV EALFNMNRAY LSLPEGTASV AGLIAMMTDH YSVMEGSESE 120 GEGHNTSGVL RKMFKRKRAK TQLSDSHDEV NIQKSIASTD GCLTFLKQAQ SYVHAANQRR 180 ATGKRTPRVP VQTSNKTDDI EGLSPSNRRA GKQLDANDDV AQFLALNASR RGGSPKDSPY 240 RTELSDNSPI KSWGKMSRTR EAQSKLRDSS MSEEWAGSNR EKVSSDKDAA VLMDMGRIDK 300 TGRRLYKKKV KVEERDGGDS DVSGEACSAT EGIGIRSRKR KLDAEASRGK YSPHGSKKRD 360 IKHPSGDELE ALEALAALAS MPPSNGMESE SSAQLKEEIT ENDMDEKSST PEATSTSNQG 420 EKSNAEADDS LLHPISVANR RSKSSRQASI DGNAVLTDKQ QPQPPSGSLR RKRKPKVLGD 480 EAPSVSNQNK YICKKEAAQE ECIKPVGRTK RAGQGPPQLK QSKTGKTLEE CITTSDKKRP 540 AMDVVVPPLQ VSASGPASSP QKPPNRRKMS LKKSLQERAK SSEHNSSRSS KSLSKQELLL 600 KDKLSTCLMY PMARRWCIFE WFYSAIDHPW FAKPDFVDYL HHVGLGHIPR LARFEWTVIK 660 SSLGRPRRFS ERFLQEEREK LNRYRESVRK HYTDLRTGAR EGLPTDLARP LSVGNRVIAI 720 HPKTREVHDG KILTVDHNKC NVLFDDLGVE LVMDIDCMPS NPLEYMPEGL RRQIDKCMSM 780 SKEAQLSGNS NFGASLIFPP CGLEDVGFSM NPPLKQGDMI APILQGKVSA TNTSCPQQTN 840 QSYITTYSKA REAEIQRAMM LQHALDDKEM EPEMMEIIKD SNTRAQAMVD AAIKAVSSVK 900 DGEDAGKVIQ EALDSIGKHQ PLHSSTVKHY EHVNGSTEQH HNPSPSDASE PDVNDDTTQD 960 KAQMPSDLIT SCVASWLKIQ RCTERQYPPA QVLQLIDAAT ASLQPRCPQN QPIFREIETC 1020 MGRIKTQILA LVPT

Sequence ? help Back to Top

Protein Sequence Length: 1034 aa Download sequence Send to blast

MAPVRKSRSV NKRFNNEFSP GKDAGNSRKN KQRKKKLSDK LGPQWSRGEL ERFYDAYRKH  60
GQDWKKVAAT IRNSRSVDMV EALFNMNRAY LSLPEGTASV AGLIAMMTDH YSVMEGSESE  120
GEGHNTSGVL RKMFKRKRAK TQLSDSHDEV NIQKSIASTD GCLTFLKQAQ SYVHAANQRR  180
ATGKRTPRVP VQTSNKTDDI EGLSPSNRRA GKQLDANDDV AQFLALNASR RGGSPKDSPY  240
RTELSDNSPI KSWGKMSRTR EAQSKLRDSS MSEEWAGSNR EKVSSDKDAA VLMDMGRIDK  300
TGRRLYKKKV KVEERDGGDS DVSGEACSAT EGIGIRSRKR KLDAEASRGK YSPHGSKKRD  360
IKHPSGDELE ALEALAALAS MPPSNGMESE SSAQLKEEIT ENDMDEKSST PEATSTSNQG  420
EKSNAEADDS LLHPISVANR RSKSSRQASI DGNAVLTDKQ QPQPPSGSLR RKRKPKVLGD  480
EAPSVSNQNK YICKKEAAQE ECIKPVGRTK RAGQGPPQLK QSKTGKTLEE CITTSDKKRP  540
AMDVVVPPLQ VSASGPASSP QKPPNRRKMS LKKSLQERAK SSEHNSSRSS KSLSKQELLL  600
KDKLSTCLMY PMARRWCIFE WFYSAIDHPW FAKPDFVDYL HHVGLGHIPR LARFEWTVIK  660
SSLGRPRRFS ERFLQEEREK LNRYRESVRK HYTDLRTGAR EGLPTDLARP LSVGNRVIAI  720
HPKTREVHDG KILTVDHNKC NVLFDDLGVE LVMDIDCMPS NPLEYMPEGL RRQIDKCMSM  780
SKEAQLSGNS NFGASLIFPP CGLEDVGFSM NPPLKQGDMI APILQGKVSA TNTSCPQQTN  840
QSYITTYSKA REAEIQRAMM LQHALDDKEM EPEMMEIIKD SNTRAQAMVD AAIKAVSSVK  900
DGEDAGKVIQ EALDSIGKHQ PLHSSTVKHY EHVNGSTEQH HNPSPSDASE PDVNDDTTQD  960
KAQMPSDLIT SCVASWLKIQ RCTERQYPPA QVLQLIDAAT ASLQPRCPQN QPIFREIETC  1020
MGRIKTQILA LVPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	468	474	LRRKRKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA10G00063

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020887237.1	0.0	protein ALWAYS EARLY 2 isoform X2
Swissprot	Q6A333	0.0	ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBL	A0A1J3HUE3	0.0	A0A1J3HUE3_NOCCA; Protein ALWAYS EARLY 2
STRING	Bostr.2570s0145.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-128	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]