PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA10G00050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | NF-YA | ||||||||
Protein Properties | Length: 289aa MW: 31241.2 Da PI: 10.2678 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 89.7 | 4e-28 | 137 | 196 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++YVN+KQy++I++RRq+R k+++ ++k+++++rkpy+h+SRh hAlrRpRgsgGrF AA10G00050 137 GTIYVNSKQYHGIIRRRQSRLKAAAvldQNKISNRNRKPYMHHSRHLHALRRPRGSGGRF 196 689********************99999*******************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.0E-28 | 134 | 199 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.83 | 135 | 199 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.0E-23 | 138 | 196 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.7E-20 | 138 | 160 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.7E-20 | 173 | 196 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MAMQTMREGV LSAPQTPWWN AFGSQPLATE SLAGVSESLA GVKVVAAGET QQGVDKQSRF 60 GTHLTFSLGD GKSLGVLPKP QGGFAMQSGC LELGFTQPQI YTKNPYGEQY YGVVSAYGSE 120 ISSGRVMLPL NMATEDGTIY VNSKQYHGII RRRQSRLKAA AVLDQNKISN RNRKPYMHHS 180 RHLHALRRPR GSGGRFLNTK SLNGSNAKKA SKETVSQSKS QPSNSQNSEV LHPENGTMNS 240 SNGLNVSGSE VTSMNYFLSS SVQSFGGMVM PSKWIAAATM DSSCCNFKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 6e-15 | 136 | 197 | 2 | 60 | HAPB protein |
4g92_A | 6e-15 | 136 | 197 | 2 | 60 | HAPB protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA10G00050 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_187220.1 | 1e-155 | nuclear factor Y, subunit A2 | ||||
Swissprot | Q9M9X4 | 1e-156 | NFYA2_ARATH; Nuclear transcription factor Y subunit A-2 | ||||
TrEMBL | A0A178VK23 | 1e-154 | A0A178VK23_ARATH; UNE8 | ||||
STRING | AT3G05690.1 | 1e-154 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3008 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05690.1 | 1e-150 | nuclear factor Y, subunit A2 |
Publications ? help Back to Top | |||
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