PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA102G00246

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

FAR1

Protein Properties

Length: 787aa MW: 90520.2 Da PI: 6.2447

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA102G00246	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	101.1	1.1e-31	83	174	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw+v+ +++eHnHel+p AA102G00246 83 FYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVKEHNHELVP 174 9*************************************999888555667889*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.4E-30	83	174	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.9E-32	296	388	IPR018289	MULE transposase domain
Pfam	PF04434	6.0E-12	564	610	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.509	576	612	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.7E-8	587	614	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 787 aa Download sequence Send to blast
MDNEVLDFDI GVGVSSGGDV DDDAIDIEHH EIDDDDMLDD SSMPGIGNNG VEDGGSYFPE 60 GDLLDLEPYE GLEFESEEAA KAFYNSYARR IGFSTRVSSS RRSRRDGAII QRQFVCAKEG 120 FRNMNEKRTK DREIKRPRTI TRVGCKASLS VKMQDSGKWV VSGFVKEHNH ELVPPDQVHC 180 LRSHRQISGP AKTLIDTLQA AGMGPRRIMS ALIKEYGGIS MVGFTEVDCR NYMRNNRQKS 240 MDGEIQLLLD YLRQMNADNP NFFYAVQGGG EDQPVGNVFW ADPKARMDFT YFGDTVTFDT 300 TYRSNRYRLP FAQFTGVNHH GQPILFGCAF IMNETEASFV WLFNTWLQAM SAHPPVSITT 360 DHDVVIRAAI MQVFPGARHR FCKWHIFKKC QEKLSHVFLK HPYFEADFHK TVNLIESVED 420 FESCWLTLLD RYELRDHEWL QAIYSDRRQW VPVCLRDTFF AEMSLTQRSD SINSYFDGYI 480 NASTNLSQFF KLYEKALESR MEKEVKADYD SMNSPPVLRT PSPMEKQASE LYTRKLFMRF 540 QEELVGTLTF MASKADDEGD FVTYQVAKYG EAHKAHYVKF DGVEMRAYCS CQMFEFSGII 600 CRHILAVFRV TNLLTLPSHY ILKRWTRNAK SNVIFDDYGL HSYANYRDSH TVRYNTLLHK 660 AVNFVQEASK TPYTCDVATV ALQEAAKTVS LAMKNEGRKA MTNGQVKERS VGDRKHMCSD 720 EEAPGQTETE DDVEKEINQL RKEVELANRR CEAYRNNLFS VLKEMEDQKL QLSIKVQNIK 780 INLKDNL

Sequence ? help Back to Top

Protein Sequence Length: 787 aa Download sequence Send to blast

MDNEVLDFDI GVGVSSGGDV DDDAIDIEHH EIDDDDMLDD SSMPGIGNNG VEDGGSYFPE  60
GDLLDLEPYE GLEFESEEAA KAFYNSYARR IGFSTRVSSS RRSRRDGAII QRQFVCAKEG  120
FRNMNEKRTK DREIKRPRTI TRVGCKASLS VKMQDSGKWV VSGFVKEHNH ELVPPDQVHC  180
LRSHRQISGP AKTLIDTLQA AGMGPRRIMS ALIKEYGGIS MVGFTEVDCR NYMRNNRQKS  240
MDGEIQLLLD YLRQMNADNP NFFYAVQGGG EDQPVGNVFW ADPKARMDFT YFGDTVTFDT  300
TYRSNRYRLP FAQFTGVNHH GQPILFGCAF IMNETEASFV WLFNTWLQAM SAHPPVSITT  360
DHDVVIRAAI MQVFPGARHR FCKWHIFKKC QEKLSHVFLK HPYFEADFHK TVNLIESVED  420
FESCWLTLLD RYELRDHEWL QAIYSDRRQW VPVCLRDTFF AEMSLTQRSD SINSYFDGYI  480
NASTNLSQFF KLYEKALESR MEKEVKADYD SMNSPPVLRT PSPMEKQASE LYTRKLFMRF  540
QEELVGTLTF MASKADDEGD FVTYQVAKYG EAHKAHYVKF DGVEMRAYCS CQMFEFSGII  600
CRHILAVFRV TNLLTLPSHY ILKRWTRNAK SNVIFDDYGL HSYANYRDSH TVRYNTLLHK  660
AVNFVQEASK TPYTCDVATV ALQEAAKTVS LAMKNEGRKA MTNGQVKERS VGDRKHMCSD  720
EEAPGQTETE DDVEKEINQL RKEVELANRR CEAYRNNLFS VLKEMEDQKL QLSIKVQNIK  780
INLKDNL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA102G00246

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020872827.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_020872829.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	V4MD13	0.0	V4MD13_EUTSA; Uncharacterized protein
STRING	Bostr.25542s0007.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]