PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA102G00149
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ARF
Protein Properties Length: 643aa    MW: 71093 Da    PI: 6.5654
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA102G00149genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.28.5e-25137238199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF+  + +++ 
  AA102G00149 137 FAKTLTQSDANNGGGFSVPRYCAETIfprldynAEPPVQ--TILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLMAGDSIVFM--RGENGD 230
                  89****************************985444444..8999*********************************************..348899 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  AA102G00149 231 LCVGIRRA 238
                  9****997 PP
2Auxin_resp107.31.7e-35290373183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  aa+ a ++  Fe+vY+PrastseF+vk+++v++++++++s G Rfkmafetedss++++ +Gtv++v+ +dp+rWp+S+Wr+L+
  AA102G00149 290 AASLAVNGRGFEIVYYPRASTSEFCVKASDVRASMSIRWSQGLRFKMAFETEDSSRISWfMGTVSDVNVTDPIRWPHSPWRLLQ 373
                  5777889999************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-38129242IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.59E-30132240IPR015300DNA-binding pseudobarrel domain
CDDcd100173.42E-23135237No hitNo description
PfamPF023629.5E-23137238IPR003340B3 DNA binding domain
SMARTSM010194.5E-23137239IPR003340B3 DNA binding domain
PROSITE profilePS5086313.493137239IPR003340B3 DNA binding domain
PfamPF065073.8E-30290373IPR010525Auxin response factor
PROSITE profilePS5174515.087579643IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MAGINFNFGE SSKMINVMNP TKNSLEKGLD PQLWHACAGG MVRMPPMNSK VFYFPQGHAE  60
NAFDFVDFAN LPIPAMILCR VSSIKYMADQ ESDEVFAKLR LIPLKNDEFD HEFSDCDLGY  120
GVESNGFESN NEKTPSFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYNA EPPVQTILAK  180
DVHGEVWKFR HIYRGTPRRH LLTTGWSNFV NQKKLMAGDS IVFMRGENGD LCVGIRRAKR  240
GGIGGNGVEY SAGWNPIGGS CGYNAVLRDD ERRNSGDRKG KVSGESVLEA ASLAVNGRGF  300
EIVYYPRAST SEFCVKASDV RASMSIRWSQ GLRFKMAFET EDSSRISWFM GTVSDVNVTD  360
PIRWPHSPWR LLQVAWDEPD LLQNVKRVNP WLVELVSNVH PIPLTSFSPP RKKMRIPQHS  420
DYNSMMNSIP IPSFPSNLPI RSSPLSSVLD NVPVGGLQGA RHAQYYGLSS SDFHNYLTTR  480
PQQQPSSHGH GLGPSPGSRN VENEKRFCFL TMGTPCADTE SKKSHIVLFG KLILPEEPIS  540
ETGDPVANLD KTQISSGGSN QNVQVSSSDE GSPCSGLETG HCKVFMESDD VGRTLDLSVL  600
GSYEELNRKL SDMFGIENSE MLSSVVYRDA SGAIKFAGNE PFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-792939451388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA102G00149
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412761.10.0auxin response factor 16
SwissprotQ93YR90.0ARFP_ARATH; Auxin response factor 16
TrEMBLV4MCQ20.0V4MCQ2_EUTSA; Auxin response factor
STRINGXP_006412761.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Yang ZB, et al.
    TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2889-904
    [PMID:25052716]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Zhang GZ, et al.
    Ectopic expression of UGT75D1, a glycosyltransferase preferring indole-3-butyric acid, modulates cotyledon development and stress tolerance in seed germination of Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 90(1-2): p. 77-93
    [PMID:26496910]
  4. Ye Y, et al.
    Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination.
    Plant J., 2016. 85(1): p. 3-15
    [PMID:26611158]
  5. Liu Z, et al.
    Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana.
    Plant J., 2016. 87(4): p. 391-402
    [PMID:27189514]
  6. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  7. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  8. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]