PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA102G00134 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | bHLH | ||||||||
Protein Properties | Length: 235aa MW: 26975.4 Da PI: 5.0094 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35 | 2.6e-11 | 60 | 102 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr+++P+ + Kl+Ka++ + ++Y+++L AA102G00134 60 LSERNRRQKLNQRLFALRSVVPNiS------KLDKASVIKDSINYMQQL 102 57*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.675 | 53 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.32E-10 | 56 | 102 | No hit | No description |
SuperFamily | SSF47459 | 1.24E-16 | 57 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.6E-16 | 59 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-12 | 59 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.3E-9 | 60 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MEDLDFDYKN YWETTMFFQN QELEFDSWPL EEAFSGSGDS GSPEGAATAS SSPANSKNVL 60 SERNRRQKLN QRLFALRSVV PNISKLDKAS VIKDSINYMQ QLIDEEKKLE AEIKELESQT 120 QMLSQLNQNC DYDCVNNFNS LDHQQQNILK SKKIKQINYN DTFESSVARM HNSPIEVVEM 180 KVTWMGEKTG VICITCKKKR ETMLQLCRVL ESLNLNILTT NFTSLSSHLS STLFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 8e-13 | 58 | 121 | 9 | 72 | Transcription factor MYC2 |
5gnj_B | 8e-13 | 58 | 121 | 9 | 72 | Transcription factor MYC2 |
5gnj_E | 8e-13 | 58 | 121 | 9 | 72 | Transcription factor MYC2 |
5gnj_F | 8e-13 | 58 | 121 | 9 | 72 | Transcription factor MYC2 |
5gnj_G | 8e-13 | 58 | 121 | 9 | 72 | Transcription factor MYC2 |
5gnj_I | 8e-13 | 58 | 121 | 9 | 72 | Transcription factor MYC2 |
5gnj_M | 8e-13 | 58 | 121 | 9 | 72 | Transcription factor MYC2 |
5gnj_N | 8e-13 | 58 | 121 | 9 | 72 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA102G00134 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006412786.2 | 1e-120 | transcription factor bHLH27 | ||||
Swissprot | Q700E3 | 1e-115 | BH027_ARATH; Transcription factor bHLH27 | ||||
TrEMBL | A0A1J3EJ61 | 1e-119 | A0A1J3EJ61_NOCCA; Transcription factor bHLH27 (Fragment) | ||||
TrEMBL | A0A1J3GQB3 | 1e-119 | A0A1J3GQB3_NOCCA; Transcription factor bHLH27 (Fragment) | ||||
STRING | XP_006412786.1 | 1e-119 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12841 | 18 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29930.1 | 1e-95 | bHLH family protein |
Publications ? help Back to Top | |||
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