PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aan021788 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | TCP | ||||||||
Protein Properties | Length: 215aa MW: 24043.6 Da PI: 6.5834 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 71.7 | 2.3e-22 | 1 | 96 | 17 | 66 |
TCP 17 gRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............................................s 66 +RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl ak++i+el+ + + Aan021788 1 LRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDVAKHEIDELPPLqmplgsfahlglqptinvasqsenlegvktstcgiswedywnpnklK 96 6************************************************77777777766655555444444444333333333333222222220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.0E-19 | 1 | 106 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 24.872 | 1 | 46 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
LRDRRVRLSV PTAIQLYDLQ DRLGLNQPSK VVDWLLDVAK HEIDELPPLQ MPLGSFAHLG 60 LQPTINVASQ SENLEGVKTS TCGISWEDYW NPNKLKERDH FFAQSSNQSS SVPLMFNNGV 120 PNSSFLKLNP SSLSLAQFGS YGSMAPHQQE DSSHNFNINM SGSQHLVYPP PSHDHNSRNH 180 TDPKHLNFEM LSSSSSSNSH IPLYTMNQGM IGPFX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-16 | 1 | 47 | 9 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-16 | 1 | 47 | 9 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022016872.1 | 1e-103 | transcription factor TCP17-like | ||||
TrEMBL | A0A2U1P958 | 1e-144 | A0A2U1P958_ARTAN; Transcription factor, TCP | ||||
STRING | XP_009792504.1 | 6e-41 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 2e-25 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |