PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aan021599 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | TCP | ||||||||
Protein Properties | Length: 256aa MW: 27796.3 Da PI: 6.1692 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.1 | 3.9e-35 | 54 | 132 | 4 | 74 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........e 74 +++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a++ai+ +tgt++ +a ++ Aan021599 54 PRKSTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEEAIIRATGTGTVPAIAVnvngtlkiP 132 5799**********************************************************88888443222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.3E-29 | 57 | 133 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.413 | 58 | 112 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MASINDNENM ESEEKEVVTE PLLEDPPAPV EITFFKEEPM MENHETKQMV AQVPRKSTKD 60 RHTKVEGRGR RIRMPATCAA RIFQLTRELG HKSDGETIRW LLEHAEEAII RATGTGTVPA 120 IAVNVNGTLK IPTTTTTSSN GEEGDGRKRK RGGNSEFYDV NDSGFAPVAP VVPQGLMPVW 180 TMGAPQGGTF FMISPNGAPS SAHIPQLWAI PASATPVFNV PMSSYVSAMQ ASDHSGASGV 240 EGVQHRQDRY LTVAKA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 151 | GRKRKRG |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024961647.1 | 1e-101 | transcription factor TCP19-like | ||||
Swissprot | O64647 | 1e-59 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | A0A2U1M9G1 | 1e-179 | A0A2U1M9G1_ARTAN; Transcription factor, TCP | ||||
STRING | PGSC0003DMT400062327 | 3e-76 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 1e-54 | TCP family protein |