PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan021124
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family TCP
Protein Properties Length: 339aa    MW: 37809.9 Da    PI: 6.631
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55176958PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-94854PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP104.12.3e-32451782118
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............. 88 
                 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl  ak++i+el+ ++ ++ ++ ++ +   ++s++s++             
  Aan021124  45 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDVAKHEIDELPPLQIPPGTFGQNLQAMLNVSSQSERgegikssvsgvnw 144
                689*************************************************************888885554444444444334434457667777778 PP

        TCP  89 ....kaaksaakskksqksaasalnlakesraka 118
                    +  ks+a  +++++++ +  n ++e r+k 
  Aan021124 145 edywNPDKSKAIAQETSTDQDCEENDQEEARNKH 178
                7777333333333333333333344444444333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.08247105IPR017887Transcription factor TCP subgroup
PfamPF036342.4E-3047176IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MKEADYETKQ EDGHDGSKIV PKPHMTTSSW SRLKDPRIVR VSRAFGGKDR HSKVCTVRGL  60
RDRRVRLSVP TAIQLYDLQD RLGLNQPSKV VDWLLDVAKH EIDELPPLQI PPGTFGQNLQ  120
AMLNVSSQSE RGEGIKSSVS GVNWEDYWNP DKSKAIAQET STDQDCEEND QEEARNKHDH  180
HGTFLQSAIS FGRNPNSSNL PGMLSNVVPN SSFPKWDPSN LSLSQFGSYG SVTPHQHDDA  240
THNFNMNVAA LPAIPSGSQV LLYPPPPPAP QTHPYFPSHN HNSSEFDPKQ LNFQMLSSSS  300
SSNFTPPLYT INQGMRPFHL SMNPKFFSLE DNGANEANK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1852106155Putative transcription factor PCF6
5zkt_B2e-1852106155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023756208.10.0transcription factor TCP13-like isoform X1
RefseqXP_023756209.10.0transcription factor TCP13-like isoform X1
TrEMBLA0A2U1KKW30.0A0A2U1KKW3_ARTAN; Transcription factor, TCP
STRINGEOY036991e-95(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.19e-47plastid transcription factor 1