PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan020823
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family ERF
Protein Properties Length: 229aa    MW: 25545.3 Da    PI: 10.1344
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55108054PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-101160995PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-203382255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g
  Aan020823 33 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRG 82
               69*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.21E-183291No hitNo description
PROSITE profilePS5103223.6833390IPR001471AP2/ERF domain
SMARTSM003804.2E-393396IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-313391IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-223392IPR016177DNA-binding domain
PfamPF008475.6E-143382IPR001471AP2/ERF domain
PRINTSPR003674.6E-113445IPR001471AP2/ERF domain
PRINTSPR003674.6E-115672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
EPNNYNNKMS PKNTPSKPNP PTNAAVNNNK EAHFRGVRKR PWGRYAAEIR DPGKKSRVWL  60
GTFDTAEEAA RAYDAAAREF RGCKAKTNFP AENNNNNFSN TNSNTFVKLQ NIKKGNHQHH  120
QQSSTSQGST VDSSTTTEPS LDLNLSSSYN NNNNVAPPVK KIPMYRFPPV TGFFAPQMFY  180
YNGILYSGQV PVFRQTFSDD SNSSSVVDVK PVKERVGLDL NLPPPAELF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-223390260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-213095268ATERF1
3gcc_A1e-213095268ATERF1
5wx9_A2e-2134941576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways, and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and by Alternaria brassicicola (locally and systemically), but only slightly by ethylene. Strong induction by wounding, cold or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022035987.13e-56ethylene-responsive transcription factor 4-like
SwissprotO803401e-36ERF78_ARATH; Ethylene-responsive transcription factor 4
TrEMBLA0A184XQ251e-124A0A184XQ25_ARTAN; ERF/AP-2 like transcription factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-23erf domain protein 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cao WH, et al.
    Modulation of ethylene responses affects plant salt-stress responses.
    Plant Physiol., 2007. 143(2): p. 707-19
    [PMID:17189334]
  3. Lyons R, et al.
    The RNA-binding protein FPA regulates flg22-triggered defense responses and transcription factor activity by alternative polyadenylation.
    Sci Rep, 2013. 3: p. 2866
    [PMID:24104185]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Gao S, et al.
    A cotton miRNA is involved in regulation of plant response to salt stress.
    Sci Rep, 2016. 6: p. 19736
    [PMID:26813144]
  6. Zhou X, et al.
    The ERF11 Transcription Factor Promotes Internode Elongation by Activating Gibberellin Biosynthesis and Signaling.
    Plant Physiol., 2016. 171(4): p. 2760-70
    [PMID:27255484]
  7. Liu W, et al.
    The ethylene response factor AtERF4 negatively regulates the iron deficiency response in Arabidopsis thaliana.
    PLoS ONE, 2017. 12(10): p. e0186580
    [PMID:29045490]