PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan020797
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family TCP
Protein Properties Length: 282aa    MW: 31428 Da    PI: 6.9669
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-812160994PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP91.91.3e-281493266
        TCP  2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............s 66
                g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WL+   k  i++l+ +               +
  Aan020797 14 FGGKDRHSKVCTVKGLRDRRIRLSVPTAIQLYDLQDRLGLNQPSKVIDWLIDSTKDDIDQLPPLqmlpgdfsqfhpvpsP 93
               689***********************************************************996666666555544441 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.5E-271692IPR005333Transcription factor, TCP
PROSITE profilePS5136929.0611674IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
XTVDPRIVRV SKAFGGKDRH SKVCTVKGLR DRRIRLSVPT AIQLYDLQDR LGLNQPSKVI  60
DWLIDSTKDD IDQLPPLQML PGDFSQFHPV PSPSIPQDLI SPQFSFSQFL STPNATFVKD  120
VGNRTLLYTK QGIKLDNDHG INQDHQRMKG KEALVENKWN EQENGDGNGG LNFFPIPQYS  180
YPGVFPYNPY NWEPSSNLSM SQFGNQGLAS SHTDSSMALP SASQLFLGPP ATITPSPYPP  240
YLMPNLGENH DLIRQYNHFH LLSSSSSQPP NSLTPVTYLS AS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-192175155Putative transcription factor PCF6
5zkt_B3e-192175155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023753897.11e-161transcription factor TCP5-like
RefseqXP_023753898.11e-161transcription factor TCP5-like
RefseqXP_023753899.11e-161transcription factor TCP5-like
TrEMBLA0A2U1QPA20.0A0A2U1QPA2_ARTAN; Transcription factor, TCP
STRINGEOY220945e-67(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-43TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5