PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan020426
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family TALE
Protein Properties Length: 415aa    MW: 46589.4 Da    PI: 6.0485
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41939961PU_unrefUnigeneView CDS
gnl|UG|Aan#S55094471PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-160882PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.71.7e-073553882154
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                k +yp++e++++L +++gL+ +q+ +WF N+R +
  Aan020426 355 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 388
                569*****************************87 PP
2ELK28.82.7e-10309330122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELKh+L+++Y+++++++++E++
  Aan020426 309 ELKHELKQGYKEKIVDIREEIL 330
                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.3E-19143187IPR005540KNOX1
PfamPF037901.3E-16146186IPR005540KNOX1
SMARTSM012562.8E-29199254IPR005541KNOX2
PfamPF037915.7E-21203253IPR005541KNOX2
PfamPF037899.6E-7309330IPR005539ELK domain
SMARTSM011886.1E-4309330IPR005539ELK domain
PROSITE profilePS512139.969309329IPR005539ELK domain
PROSITE profilePS5007111.758329392IPR001356Homeobox domain
SuperFamilySSF466893.46E-16331395IPR009057Homeodomain-like
SMARTSM003895.0E-11331396IPR001356Homeobox domain
CDDcd000861.69E-11332393No hitNo description
Gene3DG3DSA:1.10.10.607.8E-25336393IPR009057Homeodomain-like
PfamPF059201.2E-17349388IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MAYHPPNDIS QDMPLEQPSF SNNSTGKDHW LNSAILRQQA GHNNSNIFLN LQTNNNNNLD  60
SASSQHHLHN NNNNNQWLSR PILQRNISNV TGGDRNDFND HSRNLAAGQV VVDHHNVVGG  120
GETEAVAGDG EGGGGVLMSW QNARQKAEVL SHPLYEQLLA AHVACLRIAT PVDQLPRIDA  180
QLAQSQQVVS KYSSLGDLDH DHDHDDKELD QFMTHYVLLL CSFKEQLQQH VRVHAMEAVM  240
ACWEIEQSLQ SLTGVSPGEG TGATMSDDDE DQVDSEANLF DGSLDAHDGM GFGLPTESER  300
SLMERVRQEL KHELKQGYKE KIVDIREEIL RKRRAGKLPG DTTSVLKSWW QSHAKWPYPT  360
EEDKARLVQE TGLQLKQINN WFINQRKRNW HSNPSSSTVL KSKRKSNAGD RDGVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A5e-13332396872Homeobox protein PKNOX1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.66670.0trichome
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024963949.10.0homeobox protein knotted-1-like 2 isoform X2
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A1B0T7000.0A0A1B0T700_CHRMO; TALE protein (Fragment)
STRINGXP_004290929.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-171KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]