PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aan020263 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | WRKY | ||||||||
Protein Properties | Length: 232aa MW: 25657.8 Da PI: 10.199 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.1 | 2.7e-31 | 166 | 223 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +d ++++tYegeHnh+ Aan020263 166 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLDDSAMLIVTYEGEHNHT 223 9************************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.4E-15 | 118 | 162 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-33 | 152 | 224 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.666 | 159 | 222 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.11E-27 | 162 | 223 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.3E-38 | 164 | 224 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-27 | 166 | 222 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MNALPLSNHK PSLELSLVGK NSVQIGNPQQ NGGANTNYQF LQHNHQLQLK QQAEMMYRRS 60 NSGINLNFDN AGCTPTISSN RSFMSSLSMD GSVTTLDGSS FHLIGSTRST DQGSQQHKPR 120 CSARGEDGSV KCGSSGRCHC KKRKHRVKRS IKVPAVSNKL ADIPPDEYSW RKYGQKPIKG 180 SPHPRGYYKC SSMRGCPARK HVERCLDDSA MLIVTYEGEH NHTRVPSQSA NT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-22 | 157 | 226 | 7 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021987406.1 | 1e-151 | probable WRKY transcription factor 21 | ||||
Swissprot | O04336 | 9e-89 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | A0A2U1MHZ7 | 1e-173 | A0A2U1MHZ7_ARTAN; Protein WRKY1 | ||||
STRING | XP_006479579.1 | 1e-114 | (Citrus sinensis) | ||||
STRING | POPTR_0002s04440.1 | 1e-114 | (Populus trichocarpa) | ||||
STRING | XP_006443899.1 | 1e-114 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 5e-71 | WRKY DNA-binding protein 21 |