PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan020134
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family GRAS
Protein Properties Length: 336aa    MW: 37792.2 Da    PI: 7.5209
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41972046PU_unrefUnigeneView CDS
gnl|UG|Aan#S41972047PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-142698PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS400.32e-122233537373
       GRAS  37 pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp 136
                + +Rl ay++e+L ar+++s+s +ykal+++e +     e ++++ l++e++P++kf++l aN aI ea+++e+++HiiDf+i qG+QW++L+qaLa+Rp
  Aan020134   2 SRERLGAYMLEGLVARMSSSGSFIYKALKCKEPT---GGELFSYMLLLYEACPYFKFGYLSANGAIAEAIKNEDKIHIIDFQIAQGGQWVTLIQALAARP 98 
                569******************************9...9999999999***************************************************** PP

       GRAS 137 egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl 234
                +gpp+lRiTg+++++++  +   l+ +g+rL+k+Ae ++vpfef++ va + +d+el++++v+pgEal+Vn+++ lh+++desv+ +++rd++L+l+ksl
  Aan020134  99 GGPPKLRITGIDDARNSfaRGGGLNIVGQRLSKLAELCKVPFEFHA-VAVSGSDIELHHFKVQPGEALVVNCAFVLHHVPDESVNPQNHRDRLLRLIKSL 197
                *************99889999*************************.7999************************************************* PP

       GRAS 235 sPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                sPkvv++veqea+ n+++F++rf e +++y a+f+s++a l r+++eri++E+++l+ eivn++aceg er+erhe l+kWr+r+++aGF+p+pls++++
  Aan020134 198 SPKVVTLVEQEANVNTAKFFHRFQEVFSCYLAMFESIDAALERDHKERINIEQHCLAGEIVNILACEGVEREERHELLGKWRSRFTMAGFTPYPLSSYVN 297
                **************************************************************************************************** PP

       GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 ++k+ll+k+ ++ yr+ e++g+l+lgW++r Lvs +aW
  Aan020134 298 GTIKTLLEKYCDK-YRLVERDGALFLGWMNRDLVSSCAW 335
                ***********55.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.3871317IPR005202Transcription factor GRAS
PfamPF035146.9E-1202335IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
XSRERLGAYM LEGLVARMSS SGSFIYKALK CKEPTGGELF SYMLLLYEAC PYFKFGYLSA  60
NGAIAEAIKN EDKIHIIDFQ IAQGGQWVTL IQALAARPGG PPKLRITGID DARNSFARGG  120
GLNIVGQRLS KLAELCKVPF EFHAVAVSGS DIELHHFKVQ PGEALVVNCA FVLHHVPDES  180
VNPQNHRDRL LRLIKSLSPK VVTLVEQEAN VNTAKFFHRF QEVFSCYLAM FESIDAALER  240
DHKERINIEQ HCLAGEIVNI LACEGVEREE RHELLGKWRS RFTMAGFTPY PLSSYVNGTI  300
KTLLEKYCDK YRLVERDGAL FLGWMNRDLV SSCAWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-59433541374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021993292.10.0scarecrow-like protein 21
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A2U1MC270.0A0A2U1MC27_ARTAN; GRAS protein
STRINGcassava4.1_004951m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]