PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan019826
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family CO-like
Protein Properties Length: 526aa    MW: 59222.9 Da    PI: 6.1663
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55085083PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-124178PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.22.2e-05108146537
   zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                 C+ ++++ + +fC+ ++  lC  C ++ H        H
  Aan019826 108 PCDYCNQNIAVIFCRADSAKLCLFCDQHVHAAnalsskH 146
                7***************************99555666663 PP
2zf-B_box19.12.8e-06148192240
   zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 
                + ++C+ + + +++  C +++  lC+dC    H +      H+++
  Aan019826 148 RSQICDGCRSAPVSVRCSTDNLVLCRDCDWDAHGScsvsaaHDRT 192
                5689*************************9999447777888766 PP
3CCT64.43.3e-22477520144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                R  a+lRYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++
  Aan019826 477 RGDAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAN 520
                6789*************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.19E-11242IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.5E-19243IPR009072Histone-fold
PRINTSPR006234.5E-19216IPR001951Histone H4
PRINTSPR006234.5E-191729IPR001951Histone H4
PRINTSPR006234.5E-192940IPR001951Histone H4
SMARTSM003361.7E-8104151IPR000315B-box-type zinc finger
PROSITE profilePS501199.513104151IPR000315B-box-type zinc finger
CDDcd000213.51E-7107151No hitNo description
PROSITE profilePS501199.442147194IPR000315B-box-type zinc finger
CDDcd000213.41E-7151180No hitNo description
SMARTSM003361.5152194IPR000315B-box-type zinc finger
PfamPF062032.2E-16477519IPR010402CCT domain
PROSITE profilePS5101714.842477519IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
XFLENVIRDA VTHTEHARRK TVTAMDVVYA LKRQGRTLYG FGGWCVWDWV LSLAVKKENK  60
NETPSQRGNP HIQRIKLQPS FDFLIPYNKN FKKIIMSPQA NNPGDDIPCD YCNQNIAVIF  120
CRADSAKLCL FCDQHVHAAN ALSSKHHRSQ ICDGCRSAPV SVRCSTDNLV LCRDCDWDAH  180
GSCSVSAAHD RTSVDGFTGC PSPLDLAVAW GLDILNHKKK THLEYVEKLD LDPGRVSGHG  240
WGLDPDPYLQ EELIVPDESF DENGFSCGKQ KNVILKQLTE IYKRSLLLCE GDDDDVPRQQ  300
VEDDDEVQEG ASTVYFFVDD EGPLDVDVMK DGRNSDRDMG WESKPREHRR TQIWDFNMGR  360
LASPEESNAV DSAGYGTNNE GFMMKTFSEI LSEASMLDKT GLGNIYGINY STSQTDMAAL  420
NLNIQNSSND RKTTSAFGTS GYGGSNDIQF TEQNLTTADK MTPSLTKADI ELLAKNRGDA  480
MLRYKEKKKT RRYDKHIRYE SRKARADTRK RVKGRFVKAN NEDGDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hio_D1e-202433576HISTONE H4
3kwq_B1e-202434283Histone H4
3kwq_F1e-202434283Histone H4
4h9s_C1e-202434283Histone H4
4h9s_D1e-202434283Histone H4
4x23_B1e-202433879Histone H4
4x23_F1e-202433879Histone H4
4x23_L1e-202433879Histone H4
4x23_P1e-202433879Histone H4
4xzq_B1e-202433879Histone H4
4xzq_F1e-202433879Histone H4
4ys3_B1e-202433879Histone H4
4ys3_F1e-202433879Histone H4
4z66_B1e-202434182Histone H4
4z66_F1e-202434182Histone H4
5mlu_F1e-202434384Histone H4
5wcu_B1e-202434182Histone H4
5wcu_F1e-202434182Histone H4
5wcu_L1e-202434182Histone H4
5wcu_P1e-202434182Histone H4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217221KKKTH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.98470.0trichome
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021976250.11e-164zinc finger protein CONSTANS-LIKE 15-like
TrEMBLA0A2U1MSE80.0A0A2U1MSE8_ARTAN; B-box type zinc finger protein with CCT domain-containing protein
STRINGXP_009799598.11e-119(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.15e-99B-box type zinc finger protein with CCT domain