PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan019796
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family WRKY
Protein Properties Length: 415aa    MW: 46981 Da    PI: 6.5183
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S56553436PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-565160990PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.7e-3167124260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                +DgynWrKYGqK+vkgse+prsYY+Ct+++C++kkk+e++  d++++ei+Y+g+Hnh+k
  Aan019796  67 EDGYNWRKYGQKQVKGSENPRSYYKCTYPNCSMKKKLETNI-DGQITEIVYKGSHNHPK 124
                7****************************************.***************85 PP
2WRKY1054e-33246304159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Cts gC+v+k+ver+++d + v++tYeg+Hnh+
  Aan019796 246 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSLGCSVRKHVERASQDLRSVITTYEGKHNHD 304
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.0E-2756125IPR003657WRKY domain
PROSITE profilePS5081121.96461125IPR003657WRKY domain
SuperFamilySSF1182901.16E-2362125IPR003657WRKY domain
SMARTSM007746.5E-3266124IPR003657WRKY domain
PfamPF031069.9E-2467123IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-36231306IPR003657WRKY domain
SuperFamilySSF1182901.44E-28238306IPR003657WRKY domain
PROSITE profilePS5081138.033241306IPR003657WRKY domain
SMARTSM007741.4E-37246305IPR003657WRKY domain
PfamPF031062.8E-25247304IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
XRWWNEIDDN GESVWKFECL DQEQKPFAQS ELAMVQTDSN SQTQSFQSSY ATNTNTFNNQ  60
TTNKKSEDGY NWRKYGQKQV KGSENPRSYY KCTYPNCSMK KKLETNIDGQ ITEIVYKGSH  120
NHPKPQSTRR SSSSTSSLGS NNLQMSSQIL SNQEVHDYPD QSYGSQGSGP FNSVATPENS  180
SISVGDDEFD RSRSRSGGDD LDADEDEPQT KRWRASENEG ISMIGGTRTV REPRVVVQTT  240
SDIDILDDGY RWRKYGQKVV KGNPNPRSYY KCTSLGCSVR KHVERASQDL RSVITTYEGK  300
HNHDVPMARG SGHRLATATV GNNVPTMAIK PMAISHYQAN NSMVDPIRGS RFAPSSDNQS  360
PFTLETRQSP GSFKFSRFEN ALKSNYIDQQ HDSEHEFSET KEEPRDDMFL ESLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-3667306877Probable WRKY transcription factor 4
2lex_A1e-3667306877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000250|UniProtKB:Q6IEQ7}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells. Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos. {ECO:0000250|UniProtKB:Q6IEQ7}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021977846.10.0probable WRKY transcription factor 26
SwissprotQ6B6R41e-110WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2U1Q0500.0A0A2U1Q050_ARTAN; WRKY DNA-binding protein 33
STRINGXP_008457300.11e-147(Cucumis melo)
STRINGXP_004167297.11e-147(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-104WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]