PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan019620

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

Whirly

Protein Properties

Length: 289aa MW: 32447.9 Da PI: 10.0261

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S55083934	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-24659	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	216.6	2.4e-67	112	250	1	139
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlp 100 s+yk+kaal+v+++ p+f ldsg++kl+++G++ll++a+a+++r+ydW++kq+f+ls+te++++++l++++sceffhdp++++s+eG+vrk+lkvePlp Aan019620 112 SIYKGKAALTVEPRPPEFAPLDSGAFKLTKEGFILLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGARDSCEFFHDPFKGKSDEGRVRKVLKVEPLP 211 7************************************************************************************************* PP Whirly 101 dGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 dGsG+f+nlsv+n+l++ +es+++Pv+kaefa+l s+++ Aan019620 212 DGSGHFFNLSVQNKLINMDESIYIPVTKAEFAILVSAFN 250 ********************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.30.31.10	3.6E-77	102	271	IPR009044	ssDNA-binding transcriptional regulator
SuperFamily	SSF54447	4.0E-78	105	289	IPR009044	ssDNA-binding transcriptional regulator
Pfam	PF08536	2.4E-61	113	247	IPR013742	Plant transcription factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
EQKQLLKGFI KILLLPSSQT GQANIFTLTV TGEQLXDVKP FNTFNTKTFH HPKPLNPFLN 60 PQIIKFINTK PSTTTKTAKH ILKCQYSDQQ QQRPDVSSYS QPQAPKVFIG HSIYKGKAAL 120 TVEPRPPEFA PLDSGAFKLT KEGFILLQFA PAAGVRQYDW SRKQVFSLSV TEIGSIISLG 180 ARDSCEFFHD PFKGKSDEGR VRKVLKVEPL PDGSGHFFNL SVQNKLINMD ESIYIPVTKA 240 EFAILVSAFN FAVPYLLGWH TFVNSIRPED TTRLNNANSR SGADLEWSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1l3a_A	1e-118	105	288	36	219	p24: plant transcriptional regulator PBF-2
1l3a_B	1e-118	105	288	36	219	p24: plant transcriptional regulator PBF-2
1l3a_C	1e-118	105	288	36	219	p24: plant transcriptional regulator PBF-2
1l3a_D	1e-118	105	288	36	219	p24: plant transcriptional regulator PBF-2
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Aan.18435	0.0	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269\|PubMed:10948264, ECO:0000269\|PubMed:12080340, ECO:0000269\|PubMed:14960277}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022011838.1	1e-146	single-stranded DNA-binding protein WHY1, chloroplastic-like
Swissprot	Q9LL85	1e-119	WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBL	A0A251SC53	1e-145	A0A251SC53_HELAN; Putative ssDNA-binding transcriptional regulator
STRING	XP_009599234.1	1e-120	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02740.2	1e-115	ssDNA-binding transcriptional regulator