PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan019569
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family TCP
Protein Properties Length: 444aa    MW: 47948.4 Da    PI: 9.3189
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55100884PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-59833PU_refplantGDBView CDS
PUT-183a-Artemisia_annua-59835PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.13.1e-38802322134
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssaseceaesssss 81 
                 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a  +i+el+++                    +  ++ ++  ++   +
  Aan019569  80 SGGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLLKAAASSIDELPSLdpafvgggvgsdvlrchqmtT--TEDKVGISTTTTT 177
                689*************************************************************888888888777777665421..2222322223333 PP

        TCP  82 asnsssgkaaksaakskksqksaasalnlak.esrakararare.rtrekmrikn 134
                a++ s+++++ks ++s+ s++s+ s l+l++ e r kar+rar   +++++ +++
  Aan019569 178 AQAGSAKNKSKSPECSSTSETSKGSGLSLSRsENRIKARERARVmASKKENVLNQ 232
                333344477888889999*************9***********954444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.8E-3881227IPR005333Transcription factor, TCP
PROSITE profilePS5136932.13582140IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEVDEFQRQV SKFQRVSSLG STTTSDNNNN SNNNNSIKIA THGGGVNGHE SNEMDLVGSG  60
GVARLCGWPA SLVVWVSRAS GGKDRHSKVL TSKGLRDRRV RLSVSTAIQF YDLQDRLGYD  120
QPSKAVEWLL KAAASSIDEL PSLDPAFVGG GVGSDVLRCH QMTTTEDKVG ISTTTTTAQA  180
GSAKNKSKSP ECSSTSETSK GSGLSLSRSE NRIKARERAR VMASKKENVL NQVNNNLSEN  240
NNSSFTDLLT GGGGGLNVNV NVNVNANNIT TVNRPESRIH WTTSTPMDYL FTRPSQQQLS  300
SQHIQNPQFH QQQNQPQNQN HQFSFLQETF PPTTTTGSSD GGYNLSFSMT PSSGGSALGP  360
GYSRGTLQSN LPSSILPHNH HHNLQRFHSS PIDGPQSTNL PFFIVPNTGS DHFSGQGGYH  420
FSYGGGGDGV GRHSEHHHKE KSKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-2587141155Putative transcription factor PCF6
5zkt_B8e-2587141155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.16160.0leaf
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023766192.11e-153transcription factor TCP2-like
TrEMBLA0A2U1NAH50.0A0A2U1NAH5_ARTAN; CYC/TB1, R domain-containing protein
STRINGXP_008784856.13e-71(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.23e-45TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2