PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan019547
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family TALE
Protein Properties Length: 293aa    MW: 33674 Da    PI: 6.5662
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55165540PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-33759PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-072422752154
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                k +yp+++++++L +++gL+ +q+ +WF N+R +
  Aan019547 242 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 275
                469*****************************87 PP
2ELK25.13.9e-09196217122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELK +L++++++++ ++++E++
  Aan019547 196 ELKIELKQGFRSKIEDVREEIL 217
                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.3E-192771IPR005540KNOX1
PfamPF037904.5E-182970IPR005540KNOX1
SMARTSM012561.8E-2383138IPR005541KNOX2
PfamPF037916.0E-1986137IPR005541KNOX2
PROSITE profilePS512139.097196216IPR005539ELK domain
PROSITE profilePS5007111.661216279IPR001356Homeobox domain
SMARTSM003893.5E-11218283IPR001356Homeobox domain
SuperFamilySSF466892.22E-16218284IPR009057Homeodomain-like
CDDcd000867.81E-12219280No hitNo description
Gene3DG3DSA:1.10.10.601.5E-25223282IPR009057Homeodomain-like
PfamPF059201.0E-17236275IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MQEQQQQQQQ MMSGFSDHIS LSGDANRHIK AEIANHPLYE QLLSAHVACL RVATPIDQLP  60
LIDAQLSQSH HLLRSYISDH HNQPLSPHDR QELDNFLAQY LLVLCSFKEQ LQQHVRVHAV  120
EAVMACREIE HNLQALTGVT LGEGSGATMS DDEDEMPMDF SLDQSGGIDG SHDMMGFGPL  180
LPTESERSLM ERVRQELKIE LKQGFRSKIE DVREEILRKR RAGKLPGDTT SVLKDWWQQH  240
AKWPYPTEDD KAKLVEETGL QLKQINNWFI NQRKRNWHSN SNSMTALKSK RKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12219275864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272292RKRNWHSNSNSMTALKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.40480.0leaf
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024993711.10.0homeobox protein knotted-1-like 7
SwissprotQ9FPQ81e-166KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A2U1M9720.0A0A2U1M972_ARTAN; TALE protein
STRINGGorai.003G163800.11e-179(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-168KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]