PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Aan019121 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
|
||||||||||||
Family | HSF | ||||||||||||
Protein Properties | Length: 206aa MW: 24393.6 Da PI: 9.7654 | ||||||||||||
Description | HSF family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.3 | 1.6e-35 | 10 | 102 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F++k+y++++d++l++li+w +++nsf+v+d+ +f++++Lp yFkh+nf+SF+RQLn+YgF+kv+ ++ weF++++F +g+ +ll++i Aan019121 10 FVMKTYQMVNDSSLDNLIRWGTSNNSFIVVDSLDFSQRLLPAYFKHNNFSSFIRQLNTYGFRKVDPDR---------WEFANEWFLRGQIHLLKNIG 97 9****************************************************************999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 rk+++ Aan019121 98 RKRQT 102 *9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.6E-53 | 6 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.26E-33 | 7 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.1E-36 | 8 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.8E-29 | 10 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.1E-18 | 10 | 33 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.1E-18 | 48 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 49 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.1E-18 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence Send to blast |
MESNDVIAPF VMKTYQMVND SSLDNLIRWG TSNNSFIVVD SLDFSQRLLP AYFKHNNFSS 60 FIRQLNTYGF RKVDPDRWEF ANEWFLRGQI HLLKNIGRKR QTSNRLKQTR LEDDEEEDMV 120 NEIARLKQEQ KLLEQELVNM NKRLEATERR PEQMMSLLCK VAEDPNILQR MMLEKGQRSK 180 RLVDRKKQRQ LITPQTVPSC STSSSX |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-23 | 1 | 99 | 11 | 120 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Aan.3157 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024960526.1 | 1e-115 | heat stress transcription factor C-1-like | ||||
Swissprot | Q9LV52 | 1e-81 | HSFC1_ARATH; Heat stress transcription factor C-1 | ||||
TrEMBL | A0A2U1QCM6 | 1e-147 | A0A2U1QCM6_ARTAN; Winged helix-turn-helix DNA-binding domain, Heat shock transcription factor family | ||||
STRING | Solyc12g007070.1.1 | 2e-93 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24520.1 | 6e-77 | heat shock transcription factor C1 |
Publications ? help Back to Top | |||
---|---|---|---|
|