PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan018929
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family WRKY
Protein Properties Length: 257aa    MW: 28082.7 Da    PI: 6.9663
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41962676PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-70736PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.33.2e-3390148159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+++d k v++tYeg+Hnh+
  Aan018929  90 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCTVRKHVERASHDLKSVITTYEGKHNHD 148
                59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-3775150IPR003657WRKY domain
SuperFamilySSF1182903.14E-2982150IPR003657WRKY domain
PROSITE profilePS5081138.50385150IPR003657WRKY domain
SMARTSM007741.7E-3790149IPR003657WRKY domain
PfamPF031061.8E-2591148IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
XSSTIVHQGQ NGTQFESSDA VDGSTTFSND EEEDDRATHG SVSLGYDGEG DESESKRRKV  60
EAYAAEVSGA SRAIREPRVV VQTTSEVDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTSTG  120
CTVRKHVERA SHDLKSVITT YEGKHNHDVP AARNSSHNNS QAQSIQPAQI QNPMARYERP  180
HFGQGFGPHG YGYGMNLPGP GLGQMAMAGL GPNQFLGQGM MMPKGEPKVE PVSDPGLNGS  240
SVYHHQMMNR MPLGPHM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-3981151878Probable WRKY transcription factor 4
2lex_A5e-3981151878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021978177.11e-140probable WRKY transcription factor 2
SwissprotQ9FG772e-83WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A2U1QPF30.0A0A2U1QPF3_ARTAN; WRKY domain-containing protein
STRINGVIT_19s0015g01870.t011e-121(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.14e-80WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]