PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Aan018929 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
|
||||||||||||
Family | WRKY | ||||||||||||
Protein Properties | Length: 257aa MW: 28082.7 Da PI: 6.9663 | ||||||||||||
Description | WRKY family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.3 | 3.2e-33 | 90 | 148 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+++d k v++tYeg+Hnh+ Aan018929 90 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCTVRKHVERASHDLKSVITTYEGKHNHD 148 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-37 | 75 | 150 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-29 | 82 | 150 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.503 | 85 | 150 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-37 | 90 | 149 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-25 | 91 | 148 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
XSSTIVHQGQ NGTQFESSDA VDGSTTFSND EEEDDRATHG SVSLGYDGEG DESESKRRKV 60 EAYAAEVSGA SRAIREPRVV VQTTSEVDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTSTG 120 CTVRKHVERA SHDLKSVITT YEGKHNHDVP AARNSSHNNS QAQSIQPAQI QNPMARYERP 180 HFGQGFGPHG YGYGMNLPGP GLGQMAMAGL GPNQFLGQGM MMPKGEPKVE PVSDPGLNGS 240 SVYHHQMMNR MPLGPHM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-39 | 81 | 151 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 5e-39 | 81 | 151 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021978177.1 | 1e-140 | probable WRKY transcription factor 2 | ||||
Swissprot | Q9FG77 | 2e-83 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | A0A2U1QPF3 | 0.0 | A0A2U1QPF3_ARTAN; WRKY domain-containing protein | ||||
STRING | VIT_19s0015g01870.t01 | 1e-121 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G56270.1 | 4e-80 | WRKY DNA-binding protein 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|