PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan018896 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | NF-YB | ||||||||||||
Protein Properties | Length: 186aa MW: 20460.6 Da PI: 5.9561 | ||||||||||||
Description | NF-YB family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 183.1 | 2.3e-57 | 26 | 122 | 2 | 98 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegekk 98 reqdrflPian+srimkk +Pan+ki+kdaketvqecvsefisf+tseasdkcq+ekrkting+dllwa+atlGfedy+eplk yl++yre+eg++k Aan018896 26 REQDRFLPIANISRIMKKGVPANGKIAKDAKETVQECVSEFISFITSEASDKCQKEKRKTINGEDLLWAMATLGFEDYIEPLKRYLSRYREMEGDTK 122 89********************************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 8.0E-55 | 20 | 136 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.1E-41 | 28 | 134 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.6E-28 | 31 | 95 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.6E-22 | 59 | 77 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 62 | 78 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 4.6E-22 | 78 | 96 | No hit | No description |
PRINTS | PR00615 | 4.6E-22 | 97 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MADVPGSPAG GSHESGGEQS PHSNIREQDR FLPIANISRI MKKGVPANGK IAKDAKETVQ 60 ECVSEFISFI TSEASDKCQK EKRKTINGED LLWAMATLGF EDYIEPLKRY LSRYREMEGD 120 TKGSGKSHEG SARKDGAQPD YREHLAHQGS YLQGLDYGNQ QELNNDGSDA RERLAFHGSV 180 SGVIQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_B | 2e-47 | 24 | 116 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 2e-47 | 24 | 116 | 2 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and mature rosettes. {ECO:0000269|PubMed:11250072}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021973198.1 | 2e-95 | nuclear transcription factor Y subunit B-1-like isoform X2 | ||||
Refseq | XP_021973199.1 | 2e-95 | nuclear transcription factor Y subunit B-8-like isoform X3 | ||||
Swissprot | Q8VYK4 | 3e-77 | NFYB8_ARATH; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | A0A1B0T702 | 1e-103 | A0A1B0T702_CHRMO; NF-Y protein (Fragment) | ||||
STRING | XP_009620316.1 | 2e-92 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37060.3 | 1e-79 | nuclear factor Y, subunit B8 |
Publications ? help Back to Top | |||
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