PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan017976 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | ERF | ||||||||||||
Protein Properties | Length: 186aa MW: 20344.2 Da PI: 7.5546 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.6e-20 | 2 | 50 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a++ a+ kl+g Aan017976 2 NRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDIAAYKLRG 50 69*****9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.3E-35 | 1 | 64 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.642 | 1 | 58 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-10 | 2 | 13 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-22 | 3 | 59 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-31 | 3 | 59 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.77E-31 | 3 | 60 | No hit | No description |
Pfam | PF00847 | 2.8E-13 | 3 | 50 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-10 | 24 | 40 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
XNRGVRQRHW GKWVAEIRLP KNRTRLWLGT FDTAEEAALA YDIAAYKLRG DYARLNFPHL 60 RHNGSHIAGA CGXYAPLHSS VDAKLQAICQ NLAEGKSVDG GKKKSQRRST VVKPPVKLPA 120 TVVEQPEVVK VEGSSESSSS GGSSPVSELS ELSFPDFTAE DGGAWDASDC FSLEKYPSYE 180 IDWGSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-19 | 3 | 63 | 7 | 67 | ATERF1 |
3gcc_A | 1e-19 | 3 | 63 | 7 | 67 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Aan.18922 | 0.0 | leaf| trichome |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023772614.1 | 1e-88 | ethylene-responsive transcription factor RAP2-4-like | ||||
Swissprot | Q8H1E4 | 3e-70 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A2U1Q4U0 | 1e-131 | A0A2U1Q4U0_ARTAN; Ethylene response factor DREB1-1 | ||||
STRING | XP_006390026.1 | 2e-72 | (Eutrema salsugineum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 1e-55 | related to AP2 4 |
Publications ? help Back to Top | |||
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