PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan017969
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family ZF-HD
Protein Properties Length: 285aa    MW: 31615.3 Da    PI: 8.409
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41955048PU_unrefUnigeneView CDS
gnl|UG|Aan#S55095573PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-4160991PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.75e-3275127457
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                   rY+eClkNhAa++Gg+ +DGCgEfmps g++gt +alkCaAC+CHRnFHR+e 
    Aan017969  75 PRYRECLKNHAANMGGNITDGCGEFMPS-GDDGTLEALKCAACNCHRNFHRKEY 127
                  58*************************9.999********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-2176126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.7E-3076126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.0E-2976126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.25877126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.65E-18206274IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-30211275IPR009057Homeodomain-like
TIGRFAMsTIGR015653.6E-28213269IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MALSGSHEKE FGIMHTSSPY NNNNNNNNNN NHMIRESSSE TVDHGMDPDR FHGTGASVTP  60
ISVGSKLLKS PVQIPRYREC LKNHAANMGG NITDGCGEFM PSGDDGTLEA LKCAACNCHR  120
NFHRKEYPTT SPTAGPFLQL PPPLPSPSPS PSFHHHHHHH RTPPPISLHH HPNWASSVNA  180
PPIKMAFGGA TTESSSEELN FTTGAVPPYG MAKKRFRTKF TQDQKEKMLE FAEKVGWRIP  240
REDDPEVQRF CGEVGVKRQV LKVWMHNNKA TSGKKQVQDS NESIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-242142691873ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Not detected in the meristem prior to exposure to long days (LDs), but after exposure to three LDs, stable accumulation on the flanks of the meristem adjacent to floral primordia, during floral induction. {ECO:0000269|PubMed:22319055}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024977086.11e-161zinc-finger homeodomain protein 2-like isoform X1
RefseqXP_024977087.11e-161zinc-finger homeodomain protein 2-like isoform X1
SwissprotQ9M9S02e-58ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A2U1PGZ31e-180A0A2U1PGZ3_ARTAN; Homeodomain-like protein
STRINGEOY147841e-76(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.14e-57homeobox protein 24