PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aan017619 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | MYB_related | ||||||||
Protein Properties | Length: 266aa MW: 29857.7 Da PI: 9.7644 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.4 | 6.8e-13 | 25 | 69 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++WT E++++++a +++ + Wk+I + +g +t+ q++s+ qky Aan017619 25 RQNWTDIEHDKFLEALQLFDRD-WKKIEAFVG-SKTAIQIRSHAQKY 69 89******************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.22E-16 | 19 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.087 | 20 | 74 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 3.9E-17 | 23 | 72 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.8E-10 | 24 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-10 | 25 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-6 | 25 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.26E-8 | 27 | 70 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MDSNSNGNSN VKKRVRKPYT ITKSRQNWTD IEHDKFLEAL QLFDRDWKKI EAFVGSKTAI 60 QIRSHAQKYF LKVQKTGTNE HVPPPRPKRK AAHPYPLKAK NDVTNVGATQ QSSSDLIKHE 120 NTMPTDSYMW PIAQPDVGAQ DDAILHNSCS SSIDSGPGVW QAGETNNHQQ VKHTMAGRVM 180 PDFPNVYRFI GGVFDPNESN HLQKLKMMDP VDVETVVLLM KNLCANLKSP QFEDYRKLFS 240 SYDPGTGKVA SNGSFQALPR NAITSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024987309.1 | 1e-136 | protein REVEILLE 6 isoform X2 | ||||
Swissprot | Q8H0W3 | 5e-86 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A2U1NHP6 | 1e-167 | A0A2U1NHP6_ARTAN; Homeodomain-like protein | ||||
STRING | XP_010261344.1 | 2e-94 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 2e-74 | MYB_related family protein |
Publications ? help Back to Top | |||
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