PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan017256
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C3H
Protein Properties Length: 272aa    MW: 29499.2 Da    PI: 7.694
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41943094PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-71761PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06112134427
                ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                + C ff++ G+C  G+ C+F Hgp
  Aan017256 112 VACIFFQK-GFCLKGPLCPFLHGP 134
                57******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.1222352IPR000571Zinc finger, CCCH-type
PfamPF156633.7E-122478No hitNo description
SMARTSM003560.00232451IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.855480IPR000571Zinc finger, CCCH-type
SMARTSM003560.0145679IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267108135IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-5109134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5109133IPR000571Zinc finger, CCCH-type
PfamPF146080.054114133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MPSASSSAGA GAQAITTEED ETLKRNTDCV YFLASPLTCK KGSECEYRHS DVARVNPRDC  60
YYWLSGNCLN PKCAFRHPPL DGLVGADGST PVGPSVPPAH PAPYAAVPKQ GVACIFFQKG  120
FCLKGPLCPF LHGPPNTIIN KPTQTAPTNP IPELPKASHP VQNKPIQEQK FPPQVTTQRT  180
TPFSATPFSA RNGAIDKRVP SFSTSVEEPP RYKPARVVPS PVLNEQPSNK FNRGFHNDRI  240
MNGKDADVYS REPSPGFDVL VDNEIEDGEI SS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024987454.11e-109zinc finger CCCH domain-containing protein 17
SwissprotQ9ZUM05e-66C3H17_ARATH; Zinc finger CCCH domain-containing protein 17
TrEMBLA0A2U1PDA81e-150A0A2U1PDA8_ARTAN; Zinc finger, CCCH-type
STRINGXP_006470901.13e-72(Citrus sinensis)
STRINGXP_006420674.13e-72(Citrus clementina)
Publications ? help Back to Top
  1. Seok HY, et al.
    AtC3H17, a Non-Tandem CCCH Zinc Finger Protein, Functions as a Nuclear Transcriptional Activator and Has Pleiotropic Effects on Vegetative Development, Flowering and Seed Development in Arabidopsis.
    Plant Cell Physiol., 2016. 57(3): p. 603-15
    [PMID:26858286]
  2. Seok HY, et al.
    Arabidopsis non-TZF gene AtC3H17 functions as a positive regulator in salt stress response.
    Biochem. Biophys. Res. Commun., 2018. 498(4): p. 954-959
    [PMID:29548822]