PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan017039
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family TALE
Protein Properties Length: 464aa    MW: 53069 Da    PI: 5.2443
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41965891PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-3295PU_unrefplantGDBView CDS
PUT-183a-Artemisia_annua-674160992PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.94e-093513881954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   n+yp+ +e+  LAk++gLt  q+ +WF N R +
  Aan017039 351 FEHflNPYPKDSEKIMLAKQTGLTRGQIANWFINARVR 388
                665569******************************88 PP
2BELL95.74.2e-31217288172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                e+qelq+k +kL sll+eVd++Y+ y++qlq+v +  ++v g+g+a+pYt+lA  +iSrhFrcL+dai +qi
  Aan017039 217 EKQELQNKVTKLFSLLDEVDRKYREYCQQLQIVEATLDVVSGCGAARPYTALAHLTISRHFRCLRDAINGQI 288
                689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.0E-39151286IPR006563POX domain
PfamPF075265.4E-40157284IPR006563POX domain
PROSITE profilePS5007112.26329392IPR001356Homeobox domain
CDDcd000862.67E-11332393No hitNo description
SMARTSM003895.8E-9332396IPR001356Homeobox domain
SuperFamilySSF466892.44E-17333398IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-27335398IPR009057Homeodomain-like
PfamPF059202.1E-17349388IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MATYYPSSSN HQRDVFTNSY VSSQLEVESY QESPCPPVDM MYQNQTSTDT SFLELLSGNM  60
QPNSQMISRV EDRNGLDEER NLQYQELSLS LGMQIPSSSM AFQYDYLNSH IPNSSDHGSQ  120
KVENTEYLSF NVVGTPKNGQ CSISDTYDGS YGVVGRIMDS RYLKPSQELL QEVANLGDAI  180
RQLKMNRQHK VQVDEKDSKS TPLESTTSSS GELTASEKQE LQNKVTKLFS LLDEVDRKYR  240
EYCQQLQIVE ATLDVVSGCG AARPYTALAH LTISRHFRCL RDAINGQIQV TRQSLGEQDD  300
SSDRVLPRLR NMEKQLRQQR SLQHLGVNRH SWRPQRGLPE ASVSILRAWL FEHFLNPYPK  360
DSEKIMLAKQ TGLTRGQIAN WFINARVRLW KPMIEDMYKE EFNDQEGKSV NNNSSSSEDK  420
EKELAPMASD SNPDFYNEID ASRFPTQRHT DLADQYRLLS DFVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A6e-15338395562Homeobox protein Meis2
4xrm_B6e-15338395562Homeobox protein Meis2
5bng_A5e-15338395158Homeobox protein Meis2
5bng_B5e-15338395158Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.17190.0leaf| trichome
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024970257.10.0BEL1-like homeodomain protein 3 isoform X1
SwissprotQ9SIW11e-104BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLA0A2U1P2880.0A0A2U1P288_ARTAN; TALE protein
STRINGGLYMA14G07710.11e-114(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-102BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]