PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan016824 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | ERF | ||||||||||||
Protein Properties | Length: 352aa MW: 39682.6 Da PI: 5.4988 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.2e-19 | 140 | 189 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f tae+Aa+a++a + +++g Aan016824 140 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEDAARAYDAEAIRIRG 189 69*******.**********954...4**********************99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.012 | 140 | 197 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.41E-22 | 140 | 198 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.5E-32 | 140 | 198 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.22E-32 | 140 | 198 | No hit | No description |
SMART | SM00380 | 7.1E-37 | 140 | 203 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-11 | 141 | 189 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-11 | 141 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-11 | 163 | 179 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
XKAQKPATFF YNYQTDLHNF KNTDNNKKNK NKNKNKMCGG AILSDIIAPN RSRRLTSADL 60 LWNTDSSYFS SKANNVSDDA DDDDFEADFQ GFKDHHYKPS FAFSSKHPSA TATFHPGSRS 120 VKSDDLADER SGYSKKRKNQ YRGIRQRPWG KWAAEIRDPR KGVRVWLGTF NTAEDAARAY 180 DAEAIRIRGD KAKVNFPAKA TPAKPKQQKQ APKVNHTDIS EFPGSFEFVE EKPQLFHFSP 240 NEGSNSFDCS EFPWGETCPK TPEITSLLSE LDEATFMEEA NPAKKPKMEI VDLVSDCEKS 300 DDDLFFGMPY LQGAWDASSV DAFLNEDSNQ DGGNVMDLWS FDDLPVMING VV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 140 | 199 | 2 | 62 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Aan.4611 | 0.0 | trichome |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in seedlings, leaves, flowers, siliques and germinating seeds. {ECO:0000269|PubMed:22020282}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024969283.1 | 1e-145 | ethylene-responsive transcription factor RAP2-2-like | ||||
Swissprot | Q9SSA8 | 5e-60 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | A0A103YB32 | 1e-144 | A0A103YB32_CYNCS; AP2/ERF domain-containing protein | ||||
STRING | XP_009357901.1 | 2e-92 | (Pyrus x bretschneideri) | ||||
STRING | Migut.I01124.1.p | 1e-92 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 4e-54 | related to AP2 12 |