PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan016756 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | SBP | ||||||||||||
Protein Properties | Length: 205aa MW: 23449.6 Da PI: 8.7578 | ||||||||||||
Description | SBP family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 126.5 | 1.1e-39 | 115 | 189 | 2 | 76 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 Cqv+gC++ l ++k+yh+rhkvCe hsk+++v+v+g+ qrfCqqCsrfh l+efD++krsCr+rLa+hnerrrk Aan016756 115 CQVHGCSKSLVSCKDYHKRHKVCELHSKTAKVIVNGILQRFCQQCSRFHLLNEFDDGKRSCRKRLADHNERRRKL 189 *************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.3E-31 | 110 | 176 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.804 | 112 | 189 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.24E-36 | 113 | 191 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.4E-30 | 115 | 188 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MESWTFDSAS NMDFMSQNAI QGLEEMCFPQ VVGNSLLNPV MVANHNAFSE DHDMSFKLSN 60 SVVESDYKDY SGLFDLNLEK NVHQENSKVT NSPFEVSLPS KQTRMAGSVS RSLFCQVHGC 120 SKSLVSCKDY HKRHKVCELH SKTAKVIVNG ILQRFCQQCS RFHLLNEFDD GKRSCRKRLA 180 DHNERRRKLH VGRNGRLLPS YSINK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-28 | 114 | 188 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024969784.1 | 3e-68 | squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A2U1L845 | 1e-150 | A0A2U1L845_ARTAN; SBP-like protein | ||||
STRING | EOY22129 | 3e-54 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 3e-43 | SBP family protein |