PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan016746
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family NF-YA
Protein Properties Length: 290aa    MW: 32500.8 Da    PI: 8.9829
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S55029381PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-169160991PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.83.1e-32172228158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                d p+YVNaKQy++Il+RRq Rakle+++kl  k+rkpylheSRhkhAl+R RgsgGrF
  Aan016746 172 DGPIYVNAKQYNGILRRRQIRAKLEAQNKL-VKNRKPYLHESRHKHALNRVRGSGGRF 228
                57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-35170231IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.478171231IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.3E-28174228IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.5E-23174196IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860176196IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.5E-23205228IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
XTVDDRNKVS SFQGRRPDMP NLTQHHLSFL LPSSTSQQSL KMVPAPHFSA DTPELTHNQD  60
SSTGHSSDQS NKDDDISTQL IHSQDQCISS SSDESYKRLE EAQIKPILFM GNPSFGMTDH  120
QLEKNMPIVQ HAYADHYLNG LYGGYAPHPM TQPHMVHIAP ARVPLPLDLS EDGPIYVNAK  180
QYNGILRRRQ IRAKLEAQNK LVKNRKPYLH ESRHKHALNR VRGSGGRFLP SNKQQQSKPA  240
SRFLSSHCSS ASYPSGSDHH VMFSQTDHGF SSISWGNEGF LSNGDHNIGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A9e-20172229259NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024960125.11e-126nuclear transcription factor Y subunit A-4-like
TrEMBLA0A2U1PDD80.0A0A2U1PDD8_ARTAN; NF-Y protein
STRINGXP_009631340.12e-58(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-37nuclear factor Y, subunit A3