PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Aan016709 | ||||||||||||||||
Common Name | ERF4 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
|
||||||||||||||||
Family | ERF | ||||||||||||||||
Protein Properties | Length: 122aa MW: 13857.7 Da PI: 10.7127 | ||||||||||||||||
Description | ERF family protein | ||||||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.5 | 4.5e-20 | 31 | 80 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrd ++ ++r +lg+f+tae+Aa+a++aa+ +l+g Aan016709 31 HYRGVRKRP-WGRYAAEIRDpWK----KTRRWLGTFDTAEDAARAYDAAAFALRG 80 69*******.**********883....5999**********************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.58E-23 | 31 | 90 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.683 | 31 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-39 | 31 | 94 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-12 | 31 | 80 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-32 | 31 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.72E-18 | 31 | 90 | No hit | No description |
PRINTS | PR00367 | 7.9E-11 | 32 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-11 | 54 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 122 aa Download sequence Send to blast |
MAIIFGDTTP NDQSLVQSPT TRSPPSLKQF HYRGVRKRPW GRYAAEIRDP WKKTRRWLGT 60 FDTAEDAARA YDAAAFALRG SKAKMNFPAS FYPSESGTSD RKIRTTTEKA VLFDLNLPAP 120 MW |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-23 | 31 | 95 | 5 | 70 | ATERF1 |
3gcc_A | 1e-23 | 31 | 95 | 5 | 70 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Aan.20271 | 0.0 | trichome |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023766548.1 | 9e-41 | ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9FE67 | 7e-30 | ERF80_ARATH; Ethylene-responsive transcription factor 9 | ||||
TrEMBL | M4IXJ7 | 2e-69 | M4IXJ7_ARTAN; Ethylene-responsive transcription factor 4 | ||||
STRING | POPTR_0011s05570.1 | 2e-30 | (Populus trichocarpa) | ||||
STRING | XP_004493753.1 | 1e-30 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28360.1 | 2e-22 | ERF domain protein 12 |
Publications ? help Back to Top | |||
---|---|---|---|
|