PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan016643 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | WRKY | ||||||||||||
Protein Properties | Length: 274aa MW: 30206.1 Da PI: 9.2092 | ||||||||||||
Description | WRKY family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.2 | 4e-29 | 209 | 266 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWr YGqK+vkgse+prsYY+Ct+++C+vkk ers ++++ei+Y+g+H+h+k Aan016643 209 DDGYNWRIYGQKVVKGSEHPRSYYKCTHPNCEVKKIFERSY-TGQITEIVYKGTHDHPK 266 8****************************************.9**************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.2E-25 | 206 | 267 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.16E-23 | 207 | 267 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.0E-29 | 208 | 266 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.827 | 209 | 267 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.2E-22 | 209 | 265 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MNNDDDNNKM MMMNGGGSSR AKYKMMSPAK LPISRSSSSS ITIPPGLSPT SFLESPVLLT 60 NVKAEPSPTT GSFFKSPLMQ RSIGSATFSL DANSSARKTV DENNSGFFEF RPHAQPTSVP 120 QISSAGFQIA AGSNHHLGEP SGQYHHQNQN QNQNHNEPQS YSSPSPSNWE IASPREQSTA 180 LAYMPHEETN GPGKPKDPGP AIQVDRSADD GYNWRIYGQK VVKGSEHPRS YYKCTHPNCE 240 VKKIFERSYT GQITEIVYKG THDHPKPSPS RRFX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-14 | 208 | 267 | 14 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024959929.1 | 1e-138 | probable WRKY transcription factor 20 | ||||
Swissprot | Q93WV0 | 2e-59 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | A0A2U1NY82 | 1e-156 | A0A2U1NY82_ARTAN; WRKY family transcription factor family protein | ||||
STRING | XP_008227105.1 | 3e-75 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.2 | 4e-44 | WRKY family protein |