 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Aan016194 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
|
| Family |
SRS |
| Protein Properties |
Length: 323aa MW: 34434.7 Da PI: 8.633 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PUT-183a-Artemisia_annua-16160994 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 210.8 | 3.4e-65 | 108 | 265 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelets 103
t +CqdCGnqakkdC+h+RCRtCCksrg+dCathvkstWvpaa+rrerq ++ + a+ s+a++ k++r + ++++++s+t+ s+++++++ +ts
Aan016194 108 STLTCQDCGNQAKKDCTHRRCRTCCKSRGYDCATHVKSTWVPAARRRERQLMTPTG--AATVSSATSGLKKPRLT--SHTTTTSHTSNSNTTPPRSYDTS 203
5679********************************************97666554..55556677778888865..88888889999999999999999 PP
DUF702 104 s...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
s lP++v+++avf+cvrv++vddg++e+aYq++ +igGhvfkG+LydqG+e+
Aan016194 204 SshhqdasfkesLPRQVRAPAVFKCVRVTAVDDGDDEYAYQASTTIGGHVFKGFLYDQGVET 265
889999999999***********************************************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 323 aa
Download sequence Send
to blast |
GLRDVFVVAD PHGHPHSITN AGAATALGRS VGVGVIPLLS TTPCLEEDML NSRGRGNNNS 60
NSSTNNYSIQ FWQQHPQTQP HNYLNKPMIS DHGFLQASVG GSSSTSGSTL TCQDCGNQAK 120
KDCTHRRCRT CCKSRGYDCA THVKSTWVPA ARRRERQLMT PTGAATVSSA TSGLKKPRLT 180
SHTTTTSHTS NSNTTPPRSY DTSSSHHQDA SFKESLPRQV RAPAVFKCVR VTAVDDGDDE 240
YAYQASTTIG GHVFKGFLYD QGVETRDQNS FPNFSELHLG GNNSSGGGRN VGGSTSSPLY 300
PSDVYASSGG GLITGSNYGN TIN
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. |
| Uniprot | TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 9e-66 | Lateral root primordium (LRP) protein-related |
