PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan016132 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | HD-ZIP | ||||||||||||
Protein Properties | Length: 167aa MW: 19647.8 Da PI: 9.2186 | ||||||||||||
Description | HD-ZIP family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.4 | 1.4e-19 | 11 | 64 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 R +ft++q+ Le ++e ++ p +++ +LA+klgL rqV +WFqN+Ra+ k Aan016132 11 GRKRFTDKQISFLEYMYETQSRPELRMKHQLANKLGLHPRQVAIWFQNKRARSK 64 6999************************************************99 PP | |||||||
2 | HD-ZIP_I/II | 103.1 | 2.3e-33 | 12 | 101 | 3 | 92 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ++r++++q+++LE ++e++++ e + K++la++Lgl+prqva+WFqn+RAR k++q+E++y++Lk++y++l+ + e+L+ke+++L ++l+ Aan016132 12 RKRFTDKQISFLEYMYETQSRPELRMKHQLANKLGLHPRQVAIWFQNKRARSKSRQIEQEYNTLKHNYETLALKSESLKKENQALLSQLE 101 79************************************************************************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.19E-17 | 6 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.876 | 6 | 66 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.8E-15 | 8 | 70 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.8E-17 | 11 | 64 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-17 | 12 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.52E-13 | 12 | 67 | No hit | No description |
PRINTS | PR00031 | 5.5E-5 | 37 | 46 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 41 | 64 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.5E-5 | 46 | 62 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.8E-11 | 67 | 105 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MAEARKNKNE GRKRFTDKQI SFLEYMYETQ SRPELRMKHQ LANKLGLHPR QVAIWFQNKR 60 ARSKSRQIEQ EYNTLKHNYE TLALKSESLK KENQALLSQL EMLRSVAERH QEDTRRHDST 120 GNSSGEESDD RVTNSPTKSD ANVMLENYSK EIDVPFYDSV AYFEDGK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Aan.4772 | 0.0 | trichome |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024993578.1 | 2e-97 | homeobox-leucine zipper protein ATHB-12-like | ||||
Swissprot | P46897 | 6e-33 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A2U1Q8G3 | 1e-119 | A0A2U1Q8G3_ARTAN; HD-ZIP protein | ||||
STRING | Migut.E00626.1.p | 7e-38 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 2e-35 | homeobox 7 |
Publications ? help Back to Top | |||
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