PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aan015869 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | NF-YB | ||||||||
Protein Properties | Length: 153aa MW: 16925.2 Da PI: 4.4037 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 74.4 | 1.8e-23 | 9 | 91 | 3 | 85 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 ++d+ lP a +++i+k++lP + ++++d+++++ ec +efi +++se+++ c re+++ti+++ +l al lGf dy+e++ + Aan015869 9 KEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLISSESNEVCSREDKRTIAPEHVLKALEVLGFGDYIEEVYA 91 6899***************************************************************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.7E-38 | 6 | 136 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.77E-34 | 10 | 137 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.4E-20 | 12 | 77 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
PMDIVGKTKE DASLPKATMT KIIKEMLPPD VRVARDTQDL LIECCVEFIN LISSESNEVC 60 SREDKRTIAP EHVLKALEVL GFGDYIEEVY AAYEQHKLET VDTVRAGKCT NGAEMTEEEA 120 LAEQQRMFAE ARARMNGVAA APKPPEAEPS LNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 2e-34 | 10 | 132 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Aan.6142 | 2e-84 | trichome |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024971645.1 | 1e-108 | protein Dr1 homolog | ||||
Swissprot | P49592 | 1e-85 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A1B0T701 | 1e-107 | A0A1B0T701_CHRMO; NF-Y protein (Fragment) | ||||
STRING | PGSC0003DMT400010436 | 3e-96 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 3e-88 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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