PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aan015861 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | GRAS | ||||||||
Protein Properties | Length: 212aa MW: 25038.2 Da PI: 7.9733 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 123.1 | 3.4e-38 | 78 | 212 | 174 | 308 |
GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 +fe+n+++++++e++++e+L+++++E l+Vn++ + ++llde+ +s+rd+vLklv++++P++++++ + +++++ F++rf eal +ysalfd+++a Aan015861 78 FSFEYNAIATQNWEMIKIEDLKLQRNEFLVVNCHARFENLLDETNVKDSPRDRVLKLVRDMKPDLFIHSIVNGSYSAPFFVTRFKEALFHYSALFDMFDA 177 68******999***************************************************************************************** PP GRAS 274 klpreseerikvErellgreivnvvacegaerrer 308 ++ r++e+r+++E+ ++gre++nv+aceg er+er Aan015861 178 TMDRDNEQRQNYEKSFFGREVMNVIACEGHERVER 212 ********************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 21.491 | 1 | 212 | IPR005202 | Transcription factor GRAS |
Pfam | PF05340 | 1.5E-27 | 5 | 81 | IPR008004 | Uncharacterised protein family UPF0503 |
Pfam | PF03514 | 1.2E-35 | 78 | 212 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
DALGSASVFS QKLRKWRQKQ KEKKQCKRFN AGIDFERSRL GRDSQSEVAD YGLGRRSCDT 60 EPRFSIDAHR LSVEDPRFSF EYNAIATQNW EMIKIEDLKL QRNEFLVVNC HARFENLLDE 120 TNVKDSPRDR VLKLVRDMKP DLFIHSIVNG SYSAPFFVTR FKEALFHYSA LFDMFDATMD 180 RDNEQRQNYE KSFFGREVMN VIACEGHERV ER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024968070.1 | 2e-70 | scarecrow-like protein 14 | ||||
Swissprot | P0C884 | 9e-55 | SCL34_ARATH; Scarecrow-like protein 34 | ||||
TrEMBL | A0A1B0T6S6 | 2e-85 | A0A1B0T6S6_CHRMO; GRAS protein (Fragment) | ||||
STRING | XP_008359013.1 | 1e-59 | (Malus domestica) | ||||
STRING | XP_009606498.1 | 2e-59 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29065.1 | 5e-57 | GRAS family protein |