PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan015856
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family bHLH
Protein Properties Length: 139aa    MW: 16134.9 Da    PI: 4.7724
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Artemisia_annua-135465PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH469.2e-155598755
               HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                 Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L+
  Aan015856 55 VSERNRRKKLNDRLFALRAVVPNiS------KMDKASIIKDAIDYIQHLH 98
               57*********************66......*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.07E-1847114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.6474897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.30E-1451102No hitNo description
SMARTSM003531.5E-1554103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-1854114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-125597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MEDIGDDYKH YWETNMFLQN EEFDSWGGLD ETFSGYYDSS SPDGPQSSAA SKNIVSERNR  60
RKKLNDRLFA LRAVVPNISK MDKASIIKDA IDYIQHLHDQ ERVIQAEITE LESRKLESGV  120
LEYDQEMAFM STEKSKKKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-14561171266Transcription factor MYC2
5gnj_B5e-14561171266Transcription factor MYC2
5gnj_E5e-14561171266Transcription factor MYC2
5gnj_F5e-14561171266Transcription factor MYC2
5gnj_G5e-14561171266Transcription factor MYC2
5gnj_I5e-14561171266Transcription factor MYC2
5gnj_M5e-14561171266Transcription factor MYC2
5gnj_N5e-14561171266Transcription factor MYC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Aan.197250.0trichome
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024979997.11e-82transcription factor bHLH35-like
SwissprotQ700E31e-50BH027_ARATH; Transcription factor bHLH27
TrEMBLA0A2U1QHQ11e-98A0A2U1QHQ1_ARTAN; Myc-type, basic helix-loop-helix (BHLH) domain-containing protein
STRINGVIT_11s0052g00100.t017e-67(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.36e-53bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]