PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan015836

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

MYB_related

Protein Properties

Length: 270aa MW: 30034.5 Da PI: 6.8075

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S55186848	PU_ref	Unigene	View CDS
PUT-183a-Artemisia_annua-124781	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.7	6.2e-14	33	77	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE++++++a +++ + Wk+I +g +t q++s+ qky Aan015836 33 RESWTDEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 77 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.05E-17	27	83	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.897	28	82	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-7	31	83	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-18	31	80	IPR006447	Myb domain, plants
SMART	SM00717	2.6E-11	32	80	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-11	33	77	IPR001005	SANT/Myb domain
CDD	cd00167	4.71E-9	35	78	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
XHTFYPTIQN NTSMGDSSSG KKVRKPYTIT KSRESWTDEE HDKFLEALQL FDRDWKKIED 60 FVGSKTVIQI RSHAQKYFLK VQKNGSIAHV PPPRPKRKAT HPYPQKAPKN VLLPLQASMG 120 YPSSLSGLAQ GYSPWDDTSL FISQSGEIMP SQDEYELHGF EGMHASDTGS KGAGKISNIS 180 SSGIGSSSRE MPTSEVSNPG EQASIPHGIP DFSEVYSFIG SVFDPESKGH VQKLKEMDPI 240 NFETVLLLMR NLTVNLSNPE FEPMVIMSFS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:21474993, ECO:0000269\|PubMed:21483796, ECO:0000269\|PubMed:23638299}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:22902701, ECO:0000269\|PubMed:23638299}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024981183.1	1e-159	protein REVEILLE 8-like isoform X5
Swissprot	Q8RWU3	1e-119	RVE8_ARATH; Protein REVEILLE 8
TrEMBL	A0A2U1MN41	1e-173	A0A2U1MN41_ARTAN; LHY/CCA1-like 1
STRING	Solyc10g084370.1.1	1e-138	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09600.1	1e-110	MYB_related family protein

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Fogelmark K,Troein C Rethinking transcriptional activation in the Arabidopsis circadian clock. PLoS Comput. Biol., 2014. 10(7): p. e1003705 [PMID:25033214] Xing H, et al. LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors. Plant Signal Behav, 2015. 10(3): p. e1010888 [PMID:25848708] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]